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Comment: rDGIdb package inconsistency with web interface
by
James W. MacDonald
64k
This is what I see when I go to the link you provide. ![enter image description here][1] But anyway, I cannot speak for the maintainers, …
Answer: Interaction terms in DESeq2
by
James W. MacDonald
64k
You shouldn't use replicate as a coefficient in your model. That will do one of two things that you don't want. If the replicate values are…
Comment: JoinLayers function for Seurat Object for annotation with SingleR
by
Bine
▴ 20
Ok thanks, done. Shall I delete this post?
Comment: rDGIdb package inconsistency with web interface
by
christopherjamessteel1990
• 0
The address I linked (https://www.dgidb.org/api) does not state 'The previous version of DGIdb can be found at old.dgidb.org until June 1st…
Comment: JoinLayers function for Seurat Object for annotation with SingleR
by
ATpoint
★ 3.6k
Please ask at biostars.org for Seurat help which is not a Bioconductor package. As said, SingleR is generic as it can start from a matrix a…
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How to know if I should use voomWithQualityWeights() or not?
Asses fit of variance prior
Comment: DESeq2 - batch, condition and tissue information
Answer: ScRNAseq analysis scran :: quickcluster Error
Comment: Ensembl down???
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