Bioconductor OpenPrimeR

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openPrimeR

updated 13 months ago by Basti ▴ 760 • written 13 months ago by Santiago Edilberto • 0

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PCRmultiplex openPrimeR

14 months ago Santiago Edilberto • 0

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613

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openPrimeR

updated 23 months ago by matthias-doering ▴ 40 • written 23 months ago by wnussbau • 0

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600

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openPrimeR

updated 2.7 years ago by matthias-doering ▴ 40 • written 2.7 years ago by benedikt.kirchner • 0

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569

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openPrimeR

updated 2.8 years ago by matthias-doering ▴ 40 • written 3.1 years ago by marongiu.luigi • 0

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705

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openPrimeR

updated 13 months ago by Santiago Edilberto • 0 • written 3.1 years ago by marongiu.luigi • 0

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openPrimeR

3.2 years ago • updated 3.1 years ago marongiu.luigi • 0

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1.7k

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openPrimeR

written 3.2 years ago by marongiu.luigi • 0

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654

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openPrimeRui openPrimeR

4.9 years ago Vinicius Henrique da Silva ▴ 40

9 results • Page 1 of 1

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Comment: DESeq filtering specific to contrasts by Carlin95 • 0

But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…

Comment: Reading huge bismark coverage files using bbseq::read.bismark by jacques.imbert • 0

Hello, Using nThread = 1L fixed the issue. Thank you for your time and help.

Comment: Error in champ.load(): The following specified files do not exist by Basti ▴ 760

The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/

Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Votes

Comment: Reading huge bismark coverage files using bbseq::read.bismark

Answer: Reading huge bismark coverage files using bbseq::read.bismark

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

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