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openblas
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oligo package blas error
rma
openblas
blas
oligo
2.6 years ago
ch_el
▴ 10
0
votes
0
replies
1.2k
views
OpenBLAS issue with ComBat() function of the R SVA package on Torque cluster
sva
R
OpenBLAS
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
davide.chicco
• 0
1
vote
6
replies
1.7k
views
oligo: crash/segfault when fitting probelevel model
oligo
openblas
preprocessCore
updated 6.6 years ago by
James W. MacDonald
65k • written 6.6 years ago by
Guido Hooiveld
★ 3.9k
0
votes
3
replies
2.1k
views
failed to use multiple threads in R via openblas
wgcna
R
openblas
blas
threads
updated 6.8 years ago by
Martin Morgan
25k • written 6.8 years ago by
RC
• 0
4 results • Page
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Comment: Finding DEGs by using edgeR
by
Gordon Smyth
50k
Filtering (removing lowly expressed genes) is separate to normalization. It isn't clear why not subsetting would cause any difficulty. It …
Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You say that there are "too many low-reads" but actually th…
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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