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marongiu.luigi
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updated 13 months ago by
Santiago Edilberto
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written 3.1 years ago by
marongiu.luigi
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written 3.2 years ago by
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updated 23 months ago by
matthias-doering
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updated 13 months ago by
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written 13 months ago by
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14 months ago
Santiago Edilberto
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updated 2.7 years ago by
matthias-doering
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written 2.8 years ago by
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updated 2.8 years ago by
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written 3.1 years ago by
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Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
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Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
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James W. MacDonald
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Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
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Hello James,
Thank you very much for your answer and taking the time to read my post.
I understand your remark, but isn't the approach o…
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
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You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
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