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Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
If you care to know more about the process, there is a [GitHub with all the code][1]. It's pretty complicated though - the readme alone is …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
Guido Hooiveld
★ 4.1k
Thanks; I did not know which file exactly is being used. Good catch regarding the discrepancy between the 2 web pages. I will get in touch …
Answer: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
by
James W. MacDonald
67k
The data for the `OrgDb` packages comes directly from NCBI, and in this case the symbols come from the gene_info.gz file you [can get from …
Comment: Why are internal functions in the package manual?
by
James W. MacDonald
67k
No internal functions need to be documented. I get wanting to have documentation for yourself so you can remember what it's for. You'll alw…
Comment: Why are internal functions in the package manual?
by
anna
• 0
I didn't know it's allowed! For some reason I thought functions must be documented. Also it's useful for myself, even if the documentation …
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Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db?
A: DESeq2: Is it possible to convert read counts to expression values via TPM and r
Comment: limma technical repeat correction
Comment: Error: 'term_similarity_from_KEGG' not found in simplifyEnrichment package
Answer: Error: 'term_similarity_from_KEGG' not found in simplifyEnrichment package
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