Biostar

No posts found.

0 results • Page 1 of 1

Recent ...

Replies

Comment: TxDB.Hsapiens.UCSC.hg38.knownGene with locateVariants() identifying SNPs from va by davidhillis • 0

Thank you very much! I apologize for my ignorance, however I would like to clarify the problem/solution. The problem specifically occurs w…

Comment: Representation of self-loops and the calculation of degrees by Vincent J. Carey, Jr. 6.6k

Thanks for this. I think the package and this condition should be made consistent with igraph. Can you provide a PR?

Answer: Help understanding dispersion values and why so many genes change significance a by Michael Love 39k

Can you make some `plotCounts` for those genes with high mean and high dispersion? The dispersion has a maximum value based on sample size …

Comment: Weird dispersion and volcano plots in DEA with paired samples by Michael Love 39k

I don't think there's any limit to the number of pairs, but for hundreds of coefficients to estimate, I personally would use limma-voom.

Answer: minfi support of illumina Infinium methylationEPIC v2.0 by James W. MacDonald 62k

The annotation packages have not been generated by Bioconductor core, but a [long time contributor has done so][1]. You could install using…

Votes

Adjustment of covariates in 450k data using Limma

Awards • All