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Answer: RPPA data (Proteomics analysis)
by
Gordon Smyth
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Manipulating results is easy in R and limma. Just read the examples and documentation, for example `help("topTable")`.
The limma results i…
Comment: Question about filter by expression (filterByExpr) in edgeR
by
Gordon Smyth
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Something like what?
I advised you to use "all treatment factors" and use the "whole design matrix" but you've done the opposite, omitting…
Comment: Full list of differential genes not obtained in topTable
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Ankita
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thank you I tried it and it worked.
Answer: Full list of differential genes not obtained in topTable
by
Gordon Smyth
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When you have a question, the first thing you can do to help yourself is to read the help page for the function, in this case `?topTable`. …
Comment: Question about filter by expression (filterByExpr) in edgeR
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mohammedtoufiq91
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@gordonsmyth Meaning, something like the the below?
filterByExpr (y)
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