Showing : org.hs.eg.db • reset
2
votes
4
replies
412
views
Use of data packages in containers
org.Hs.eg.db
updated 3 months ago by ▴ 730 • written 4 months ago by ▴ 20
0
votes
1
reply
527
views
Mapping of probe IDs to gene gene symbols for Affymetrix Human Clariom D Assay platform
GeneMapping AnnotationDbi AffymetrixDataTestFiles GeneExpressionSignature org.Hs.eg.db
updated 12 months ago by 65k • written 12 months ago by • 0
0
votes
2
replies
1.0k
views
Download package ' org.Hs.eg.db 'when a problem emerged
org.Hs.eg.db
updated 14 months ago by • 0 • written 14 months ago by • 0
2
votes
3
replies
1.2k
views
org.Hs.eg.db gives more than one ENTREZID for a gene symbol
org.Hs.eg.db AnnotationDbi
updated 15 months ago by 65k • written 15 months ago by • 0
0
votes
1
reply
587
views
REFSEQ identifiers XP_047XXXXXX do not have ENTREZID within org.Hs.eg.db
org.Hs.eg.db
updated 19 months ago by 50k • written 19 months ago by • 0
0
votes
3
replies
1.2k
views
Differences in ENSEMBL => ENTREZID mapping coverage between org.Hs.eg.db and AnnotationHub resources
AnnotationHub org.Hs.eg.db ensembldb
21 months ago • updated 20 months ago sandmann.t ▴ 70
1
vote
1
reply
1.2k
views
org.Hs.eg.db，Error: could not find function ".libPath"
org.Hs.eg.db
updated 2.0 years ago by ★ 3.3k • written 2.0 years ago by • 0
5
votes
13
replies
4.1k
views
Getting error
enrichplot clusterProfiler org.Hs.eg.db
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
4
votes
6
replies
2.3k
views
OrgDb (org.Hs.eg.db) missing many EntrezIDs and their Symbols (Compared to Ensembl GRChg8 v103)
AnnotationHub OrganismDbi org.Hs.eg.db
updated 2.1 years ago by 50k • written 2.1 years ago by • 0
1
vote
3
replies
2.8k
views
Error in installing org.Hs.eg.db
org.Hs.eg.db org.H
2.4 years ago 2041792073 • 0
0
votes
1
reply
1.1k
views
problem in installing "org.Hs.eg.db" package
org.Hs.eg.db
updated 2.4 years ago by 3.8k • written 2.4 years ago by • 0
1
vote
2
replies
1.1k
views
The RSQLite package fails to be installed
RSQLite org.Hs.eg.db
2.7 years ago chenghaomai • 0
1
vote
2
replies
1.1k
views
unable to install "org.Hs.eg.db"
Rterm.exe BiocManager org.Hs.eg.db
updated 2.9 years ago by 65k • written 2.9 years ago by • 0
0
votes
3
replies
1.1k
views
Issue "one-to-many" with org.Hs.eg.db
org.Hs.eg.db
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
1
vote
2
replies
1.4k
views
PATHVIEW incorrect values being plotted in output
pathview org.Hs.eg.db
3.0 years ago Rodrigo • 0
0
votes
1
reply
892
views
can NOT library ‘org.Hs.eg.db’
org.Hs.eg.db
updated 3.0 years ago by ★ 6.5k • written 3.0 years ago by ▴ 30
44
votes
29
replies
11k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db pathview
updated 3.0 years ago by ▴ 130 • written 3.0 years ago by ▴ 160
6
votes
15
replies
5.9k
views
Couldn't load org.Hs.eg.db
org.Hs.eg.db
updated 3.0 years ago by • 0 • written 3.0 years ago by ▴ 30
3
votes
3
replies
2.4k
views
Get the latest gene name from Entrez ID
AnnotationDbi org.Hs.eg.db
3.1 years ago sgupt46 • 0
3
votes
2
replies
1.3k
views
Error when using org.Hs.eg.db package
org.Hs.eg.db
updated 3.1 years ago by 65k • written 3.1 years ago by • 0
0
votes
4
replies
3.7k
views
Problem with install installation("org.Hs.eg.db") package
org.Mm.eg.db org.Hs.eg.db
3.1 years ago Eslam • 0
0
votes
1
reply
1.6k
views
problem of install packages "org.Hs.eg.db"
org.Hs.eg.db
updated 3.2 years ago by 25k • written 3.2 years ago by • 0
11
votes
13
replies
4.0k
views
How to retrieve genomic coordinates for a list of entrezID and their respective gene names
genomic AnnotationHub GenomicRanges org.Hs.eg.db
3.4 years ago • updated 3.2 years ago rohitsatyam102 ▴ 20
0
votes
0
replies
701
views
Regarding Genome versions
org.Hs.eg.db BSgenome.Hsapiens.UCSC.hg38
3.2 years ago Konstantinos Yeles ▴ 80
4
votes
2
replies
1.4k
views
ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?
AnnotationDbi EnsDb.Hsapiens org.Hs.eg.db
updated 3.3 years ago by ★ 2.0k • written 3.3 years ago by • 0
5
votes
7
replies
2.5k
views
Duplicated ENTREZID gene annotations org.Hs.eg.db
ENTREZID SYMBOL AnnotationDbi org.Hs.eg.db
updated 3.3 years ago by 50k • written 3.3 years ago by • 0
2
votes
2
replies
2.6k
views
mapping gene type or biotype to ENSEMBL ID
ensembldb biomaRt org.Hs.eg.db Annotation
updated 3.3 years ago by ★ 2.0k • written 3.3 years ago by • 0
4
votes
4
replies
1.9k
views
Annotation with org.Hs.eg.db Genome Build 38
AnnotationDbi org.Hs.eg.db
3.4 years ago Bine ▴ 40
2
votes
2
replies
2.3k
views
Error while installing "org.Hs.eg.db"
org.Hs.eg.db
3.4 years ago sevencds ▴ 10
2
votes
2
replies
826
views
Annotation: Use of org.Hs.egCHR to map Gene Entrez to Chromosome
org.Hs.egCHR org.Hs.eg.db
3.4 years ago Bine ▴ 40
4
votes
3
replies
2.2k
views
Gene conversion from SYMBOL to ENTREZ using AnnotationDbi doesn't convert some of the genes
AnnotationDbi org.Hs.eg.db
3.4 years ago Emilia ▴ 30
0
votes
2
replies
1.4k
views
Error in installing org.Hs.eg.db
software error org.Hs.eg.db win10
updated 3.6 years ago by 25k • written 3.6 years ago by • 0
0
votes
1
reply
882
views
After "DBI" and "AnnotationDbi" are installed, the AnnotationDbi dependency package is still not available when "org.hs.eg.db" is installed
org.hs.eg.db AnnotationDbi
updated 4.1 years ago by 25k • written 4.1 years ago by • 0
1
vote
1
reply
918
views
Error with installation of org.Hs.eg.db
software error org.Hs.eg.db
updated 4.4 years ago by 65k • written 4.4 years ago by • 0
1
vote
6
replies
2.0k
views
why org.Hs.egGO2ALLEGS contain genes number difference from GO database?
org.Hs.eg.db org.Hs.egGO2ALLEGS
updated 22 months ago by • 0 • written 4.7 years ago by • 0
0
votes
1
reply
1.1k
views
org.Hs.eg.db can not be downloaded
org.Hs.eg.db
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
2
votes
5
replies
952
views
Cannot find more than a 100 GO:CC ids on org.Hs.eg.db
org.Hs.eg.db annota org.Hs.eg. GO.db
updated 4.9 years ago by 65k • written 4.9 years ago by • 0
4
votes
5
replies
1.5k
views
Getting CDSCHROM values from ENSEMBL/SYMBOL keys using mapIds from TxDb.Hsapiens.UCSC.hg19.knownGene
ensembl cdschrom org.Hs.eg.db AnnotationDbi SingleCellExperiment
updated 5.1 years ago by 65k • written 5.1 years ago by ▴ 10
3
votes
3
replies
5.0k
views
failing to install the package org.Hs.eg.db in R (version 3.5.2 )
org.Hs.eg.db AnnotationDbi
updated 14 months ago by • 0 • written 5.2 years ago by • 0
0
votes
1
reply
1.5k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
5.4 years ago natske ▴ 10
2
votes
1
reply
1.7k
views
Ensemble and Entrez disconnected?
ensembl entrez biomart org.hs.eg.db
updated 5.4 years ago by 65k • written 5.4 years ago by • 0
4
votes
3
replies
1.8k
views
Gene-GO-term relationship discrepancy between org.Hs.eg.db and geneontology.org
org.hs.eg.db
updated 5.7 years ago by 65k • written 5.7 years ago by • 0
0
votes
1
reply
1.6k
views
Get Gene IDs for a list of Gene Names in R
r bioinformatics org.Hs.eg.db genetics
updated 5.8 years ago by 25k • written 5.8 years ago by • 0
1
vote
1
reply
926
views
genes in rhesus genome (ref. TxDb.Mmulatta.UCSC.rheMac8.refGene)
org.hs.eg.db org.mmu.eg.db
updated 6.0 years ago by 65k • written 6.0 years ago by ▴ 120
0
votes
0
replies
1.3k
views
I finally solved my problem with installing "org.Hs.eg.db"!
goseq org.hs.eg.db
6.1 years ago nancyjwahl7 • 0
1
vote
3
replies
12k
views
Converting gene symbol list to Entrez IDs
org.hs.eg.db entrez gene identifiers genesymbols
updated 6.2 years ago by ▴ 70 • written 6.2 years ago by ▴ 10
0
votes
5
replies
1.8k
views
enrichGO returning NA
clusterprofiler org.hs.eg.db
updated 6.3 years ago by ★ 1.2k • written 6.3 years ago by • 0
1
vote
12
replies
2.8k
views
Error: C stack usage when installing Txdb package
txdb.hsapiens.ucsc.hg38.knowngene org.hs.eg.db
updated 6.4 years ago by ★ 3.7k • written 6.4 years ago by ★ 1.1k
3
votes
3
replies
3.6k
views
Correct annotation of DGEList object from edgeR package regarding an RNA-Seq dataset
edger DGEList org.hs.eg.db gene annotation
updated 2.6 years ago by • 0 • written 6.4 years ago by ▴ 830
0
votes
3
replies
2.3k
views
.onLoad failed in loadNamespace() for 'org.Hs.eg.db'
org.Hs.eg.db loadNamespace .onLoad dbFileConnect(dbfile)
updated 6.5 years ago by 65k • written 6.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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