Showing : org.mm.eg.db • reset
8
votes
4
replies
5.6k
views
how to extract "Gene type" from org.Mm.eg.db?
annotation org.Mm.eg.db
11.1 years ago Guido Hooiveld ★ 4.1k
7
votes
11
replies
6.5k
views
annotatePeak() in ChIPseeker - how long does it take to run?
annotatePeak chipseeker chipseq org.Mm.eg.db TxDb.Mmusculus.UCSC.mm9.knownGene
updated 10.3 years ago by 25k • written 10.5 years ago by • 0
1
vote
2
replies
1.6k
views
GO evidence code IMR
org.mm.eg.db GO
9.5 years ago Peter Langfelder ★ 3.0k
1
vote
2
replies
2.1k
views
SYMBOL is not the official MGI gene symbol?
org.mm.eg.db annotationdbi
updated 7.4 years ago by 68k • written 7.4 years ago by ▴ 20
0
votes
2
replies
4.1k
views
Error in testForValidKeytype(x, keytype) : Invalid keytype: TAIR. Please use the keytypes method to see a listing of valid arguments.
org.Mm.eg.db
updated 4.7 years ago by ★ 4.1k • written 4.7 years ago by • 0
4
votes
2
replies
4.5k
views
select keys from org.Mm.eg.db
org.mm.eg.db select list
updated 10.3 years ago by 68k • written 10.3 years ago by ★ 1.5k
1
vote
2
replies
12k
views
select() gene in db not working although key exists
annotationdbi org.mm.eg.db org.dm.eg.db select
10.8 years ago • updated 10.7 years ago Patrick Schorderet ▴ 20
4
votes
3
replies
2.3k
views
Selecting Correct Set of Gene IDs from Mouse Gencode GFF3 for RNA Seq Analysis (Removing Genes without symbols)
deseq2 tximport org.mm.eg.db gencode
7.8 years ago pvd2107 ▴ 30
1
vote
5
replies
4.5k
views
Is org.Mm.eg.db updated to mus musculus version 99?
org.Mm.eg.db AnnotationDbi
5.7 years ago kavator ▴ 30
0
votes
4
replies
5.0k
views
Problem with install installation("org.Hs.eg.db") package
org.Mm.eg.db org.Hs.eg.db
4.8 years ago Eslam • 0
0
votes
1
reply
3.3k
views
Download of package ‘org.Mm.eg.db’ failed
org.Mm.eg.db
4.8 years ago kevin • 0
3
votes
2
replies
3.1k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 2.4 years ago by ★ 4.1k • written 2.4 years ago by ▴ 10
1
vote
4
replies
3.0k
views
Large differences in gene content for GO terms between org.Mm.eg.db and msigdbr
org.Mm.eg.db GO msigdbr
2.9 years ago S ▴ 10
3
votes
9
replies
2.3k
views
Different annotation packages (org.Mm.eg.db, EnsDb.Mmusculus.v79, BiomaRt) returning drastically different numbers of transcripts
AnnotationDbi EnsDb.Mmusculus.v79 biomaRt org.Mm.eg.db
updated 11 months ago by • 0 • written 12 months ago by • 0
1
vote
2
replies
2.5k
views
Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db.
org.Mm.eg.db AnnotationDbi
updated 4.5 years ago by 68k • written 4.5 years ago by ▴ 30
1
vote
8
replies
1.7k
views
Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
gsea mice org.Mm.eg.db
updated 14 months ago by 68k • written 14 months ago by • 0
1
vote
3
replies
2.1k
views
Genome side annotation for drosophila
genome annotation drosophila melanogaster org.Mm.eg.db
updated 10.8 years ago by ★ 7.2k • written 10.8 years ago by ▴ 20
0
votes
1
reply
2.8k
views
How to use org.Mm.eg.db as chip in topGO printGenes function
topgo org.mm.eg.db
updated 10.4 years ago by • 0 • written 10.6 years ago by • 0
3
votes
2
replies
2.2k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 10.5 years ago by 68k • written 10.5 years ago by • 0
0
votes
4
replies
2.1k
views
missing gene_ids in org.Mm.egENSEMBL
org.mm.eg.db annotation
updated 10.1 years ago by 68k • written 10.1 years ago by ▴ 30
4
votes
8
replies
6.0k
views
Annotating DEseq output using AnnotationDbi mapIds and most results say NA
AnnotationDbi mapIds org.Mm.eg.db ENSEMBLTRANS
updated 9.0 years ago by 68k • written 9.0 years ago by ▴ 10
2
votes
1
reply
1.6k
views
TopGO - Incorrect mapping genes to GO terms
topgo go org.mm.eg.db
updated 7.9 years ago by 68k • written 7.9 years ago by • 0
2
votes
3
replies
3.4k
views
org.Mm.eg.db gives wrong symbol for MT genes
org.mm.eg.db
12.4 years ago • updated 7.4 years ago Gordon Smyth 53k
4
votes
5
replies
3.8k
views
Failed to load "org.Mm.eg.db" package
org.Mm.eg.db
4.8 years ago • updated 4.7 years ago Nicol • 0
0
votes
1
reply
1.5k
views
ENSEMBL records not complete in org.Mm.eg.db?
org.Mm.eg.db
updated 4.7 years ago by ★ 4.0k • written 4.7 years ago by • 0
2
votes
2
replies
2.7k
views
Error: package or namespace load failed for ‘org.Mm.eg.db':
org.Mm.eg.db
4.7 years ago Jack • 0
1
vote
9
replies
3.7k
views
Most enriched pathway is not expressed when modifying universe parameter
DESeq2 clusterProfiler Pathways RNASeq org.Mm.eg.db
updated 19 months ago by 68k • written 19 months ago by ▴ 10
1
vote
2
replies
1.5k
views
select with org.Mm.eg.db does not give ENSEMBL ids
org.Mm.eg.db
3.0 years ago raf4 ▴ 30
0
votes
1
reply
2.4k
views
Converting gene symbols to entrez ID
AnnotationDbi org.Mm.eg.db
updated 3.8 years ago by 68k • written 3.8 years ago by • 0
29 results • Page 1 of 1
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Comment: Development of MSstat workflow to analyze DIA time series data by Gordon Smyth 53k
Are there any other explanatory factors or covariates in your experiment other than time point? Do you have biological replicates at each t…
Answer: Question about the filterByExpr function inputs in edgeR by Gordon Smyth 53k
Either of these choices is perfectly acceptable from an edgeR analysis point of view, it is more to do with which is more relevant for your…
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Your follow-up question is very much wider than the first, and is essentially a research question rather a software question. As one of the…
Comment: Error in creating BSGenome package by Nguyen • 0
I keep running into this error, please help: ``` Writing all sequences to './BSgenome.Panubis.NCBI.Panubis1.0/inst/extdata/single_sequenc…
Comment: Joining different datasets and analyzing using the group-specific condition effe by James W. MacDonald 68k
There is an example of how you can do this in the [DESeq vignette][1]. An alternative would be to fit a linear mixed model using the `vari…
Votes
A: DESeq2: What is the unit of DESeq2 normalized read count (VST)? Is it tag per mi
Answer: Clarification on counting in Rsubread (featureCounts)
Comment: Clarification on counting in Rsubread (featureCounts)
C: ControlGenes/ housekeeping genes Deseq2
Answer: Clarification on counting in Rsubread (featureCounts)
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Popular Question to mohammedtoufiq91 ▴ 10
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Commentator to James W. MacDonald 68k
Great Question to fl ▴ 20
Popular Question to Gordon Smyth 53k
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