Showing : org.mm.eg.db • reset
7
votes
11
replies
4.8k
views
annotatePeak() in ChIPseeker - how long does it take to run?
annotatePeak chipseeker chipseq org.Mm.eg.db TxDb.Mmusculus.UCSC.mm9.knownGene
updated 8.6 years ago by 25k • written 8.7 years ago by • 0
4
votes
8
replies
4.4k
views
Annotating DEseq output using AnnotationDbi mapIds and most results say NA
AnnotationDbi mapIds org.Mm.eg.db ENSEMBLTRANS
updated 7.3 years ago by 65k • written 7.3 years ago by ▴ 10
4
votes
5
replies
2.2k
views
Failed to load "org.Mm.eg.db" package
org.Mm.eg.db
3.0 years ago Nicol • 0
1
vote
5
replies
2.5k
views
Is org.Mm.eg.db updated to mus musculus version 99?
org.Mm.eg.db AnnotationDbi
4.0 years ago kavator ▴ 30
8
votes
4
replies
4.7k
views
how to extract "Gene type" from org.Mm.eg.db?
annotation org.Mm.eg.db
9.4 years ago Guido Hooiveld ★ 3.9k
1
vote
4
replies
1.2k
views
Large differences in gene content for GO terms between org.Mm.eg.db and msigdbr
org.Mm.eg.db GO msigdbr
14 months ago S ▴ 10
0
votes
4
replies
3.7k
views
Problem with install installation("org.Hs.eg.db") package
org.Mm.eg.db org.Hs.eg.db
3.1 years ago Eslam • 0
0
votes
4
replies
1.5k
views
missing gene_ids in org.Mm.egENSEMBL
org.mm.eg.db annotation
updated 8.4 years ago by 65k • written 8.4 years ago by ▴ 30
4
votes
3
replies
1.6k
views
Selecting Correct Set of Gene IDs from Mouse Gencode GFF3 for RNA Seq Analysis (Removing Genes without symbols)
deseq2 tximport org.mm.eg.db gencode
6.1 years ago pvd2107 ▴ 30
1
vote
3
replies
1.4k
views
Genome side annotation for drosophila
genome annotation drosophila melanogaster org.Mm.eg.db
updated 9.0 years ago by ★ 7.2k • written 9.0 years ago by ▴ 20
2
votes
3
replies
2.5k
views
org.Mm.eg.db gives wrong symbol for MT genes
org.mm.eg.db
10.7 years ago • updated 5.7 years ago Gordon Smyth 50k
1
vote
2
replies
617
views
select with org.Mm.eg.db does not give ENSEMBL ids
org.Mm.eg.db
15 months ago raf4 ▴ 20
1
vote
2
replies
11k
views
select() gene in db not working although key exists
annotationdbi org.mm.eg.db org.dm.eg.db select
9.0 years ago Patrick Schorderet ▴ 20
3
votes
2
replies
1.8k
views
Annotating RNAseq with GO (gene ontology) returns #NA for (nearly) all Entrez ids.
org.mm.eg.db annotation rnaseqgene
updated 8.8 years ago by 65k • written 8.8 years ago by • 0
4
votes
2
replies
3.4k
views
select keys from org.Mm.eg.db
org.mm.eg.db select list
updated 8.6 years ago by 65k • written 8.6 years ago by ★ 1.5k
1
vote
2
replies
1.1k
views
GO evidence code IMR
org.mm.eg.db GO
7.7 years ago Peter Langfelder ★ 3.0k
1
vote
2
replies
1.3k
views
SYMBOL is not the official MGI gene symbol?
org.mm.eg.db annotationdbi
updated 5.7 years ago by 65k • written 5.7 years ago by ▴ 20
3
votes
2
replies
1.0k
views
ERROR in EnrichKEGG(), 'species should be listed' in, download method do not change
KEGG DESeq2 biomaRt clusterProfiler org.Mm.eg.db
updated 8 months ago by ★ 3.9k • written 8 months ago by ▴ 10
1
vote
2
replies
1.4k
views
Apparent Ensembl - Entrez gene mis-match in org.Mm.eg.db.
org.Mm.eg.db AnnotationDbi
updated 2.7 years ago by 65k • written 2.7 years ago by ▴ 30
0
votes
2
replies
2.6k
views
Error in testForValidKeytype(x, keytype) : Invalid keytype: TAIR. Please use the keytypes method to see a listing of valid arguments.
org.Mm.eg.db
updated 3.0 years ago by ★ 3.9k • written 3.0 years ago by • 0
2
votes
2
replies
1.7k
views
Error: package or namespace load failed for ‘org.Mm.eg.db':
org.Mm.eg.db
3.0 years ago Jack • 0
0
votes
1
reply
1.5k
views
Converting gene symbols to entrez ID
AnnotationDbi org.Mm.eg.db
updated 2.1 years ago by 65k • written 2.1 years ago by • 0
2
votes
1
reply
1.2k
views
TopGO - Incorrect mapping genes to GO terms
topgo go org.mm.eg.db
updated 6.2 years ago by 65k • written 6.2 years ago by • 0
0
votes
1
reply
1.6k
views
Download of package ‘org.Mm.eg.db’ failed
org.Mm.eg.db
3.1 years ago kevin • 0
0
votes
1
reply
851
views
ENSEMBL records not complete in org.Mm.eg.db?
org.Mm.eg.db
updated 2.9 years ago by ★ 3.9k • written 2.9 years ago by • 0
0
votes
1
reply
2.4k
views
How to use org.Mm.eg.db as chip in topGO printGenes function
topgo org.mm.eg.db
updated 8.7 years ago by • 0 • written 8.9 years ago by • 0
26 results • Page 1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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