Bioconductor Organismdb

Showing : organismdb • reset

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2.5k

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 9.4 years ago by dalloliogm ▴ 50 • written 9.7 years ago by Georg Otto ▴ 120

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943

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AnnotationForge OrganismData OrganismDb

10 months ago abhisek001 • 0

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3.9k

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annotationdbi annotation organismdb loadnamespace

9.5 years ago milorobertsmith • 0

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1.4k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 10.4 years ago by Matthias Lienhard ▴ 240 • written 10.4 years ago by Hervé Pagès 16k

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2.1k

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organismdb annotationdbi annotationforge

updated 9.6 years ago by Marc Carlson ★ 7.2k • written 9.6 years ago by artur ▴ 80

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1.2k

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go annotation organismdb

updated 9.5 years ago by James W. MacDonald 65k • written 9.5 years ago by Guido Hooiveld ★ 3.9k

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2.6k

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promoter granges refseq ucsc organismdb

updated 8.4 years ago by Robert Castelo ★ 3.3k • written 8.4 years ago by efoss ▴ 10

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2.6k

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annotationhub organismdb orgdb unsupported organisms

updated 8.2 years ago by Valerie Obenchain ★ 6.8k • written 8.3 years ago by Guido Hooiveld ★ 3.9k

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1.2k

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annotation organismdb

updated 7.7 years ago by Martin Morgan 25k • written 7.7 years ago by Guido Hooiveld ★ 3.9k

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2.1k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

10.4 years ago Hervé Pagès 16k

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780

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clusterProfiler OrganismDb

updated 4 months ago by Guido Hooiveld ★ 3.9k • written 4 months ago by Aastha Kapoor • 0

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1.9k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

10.4 years ago Hervé Pagès 16k

12 results • Page 1 of 1

Recent ...

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Comment: Math expression in shapeCustom legend in EnhancedVolcano by pl23 • 0

Hi, Yes, I've tried this, but I am not sure if it is possible to assign `bquote` values to the names of a vector. In particular, if I use…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…

Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Votes

biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0