Bioconductor Organismdb

Showing : organismdb • reset

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756

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clusterProfiler OrganismDb

updated 4 months ago by Guido Hooiveld ★ 3.9k • written 4 months ago by Aastha Kapoor • 0

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932

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AnnotationForge OrganismData OrganismDb

9 months ago abhisek001 • 0

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annotation organismdb

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by Guido Hooiveld ★ 3.9k

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2.6k

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annotationhub organismdb orgdb unsupported organisms

updated 8.2 years ago by Valerie Obenchain ★ 6.8k • written 8.2 years ago by Guido Hooiveld ★ 3.9k

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2.6k

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promoter granges refseq ucsc organismdb

updated 8.4 years ago by Robert Castelo ★ 3.2k • written 8.4 years ago by efoss ▴ 10

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3.9k

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annotationdbi annotation organismdb loadnamespace

9.4 years ago milorobertsmith • 0

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go annotation organismdb

updated 9.5 years ago by James W. MacDonald 65k • written 9.5 years ago by Guido Hooiveld ★ 3.9k

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organismdb annotationdbi annotationforge

updated 9.6 years ago by Marc Carlson ★ 7.2k • written 9.6 years ago by artur ▴ 80

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 9.4 years ago by dalloliogm ▴ 50 • written 9.7 years ago by Georg Otto ▴ 120

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1.4k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 10.3 years ago by Matthias Lienhard ▴ 240 • written 10.3 years ago by Hervé Pagès 16k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

10.4 years ago Hervé Pagès 16k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

10.4 years ago Hervé Pagès 16k

12 results • Page 1 of 1

Recent ...

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Votes

Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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