Bioconductor Organismdb

Showing : organismdb • reset

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3.9k

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annotationdbi annotation organismdb loadnamespace

9.5 years ago milorobertsmith • 0

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2.6k

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annotationhub organismdb orgdb unsupported organisms

updated 8.2 years ago by Valerie Obenchain ★ 6.8k • written 8.3 years ago by Guido Hooiveld ★ 3.9k

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2.6k

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promoter granges refseq ucsc organismdb

updated 8.4 years ago by Robert Castelo ★ 3.3k • written 8.4 years ago by efoss ▴ 10

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2.5k

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GO OrganismDb ggbio GO OrganismDb ggbio

updated 9.4 years ago by dalloliogm ▴ 50 • written 9.7 years ago by Georg Otto ▴ 120

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2.1k

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organismdb annotationdbi annotationforge

updated 9.6 years ago by Marc Carlson ★ 7.2k • written 9.6 years ago by artur ▴ 80

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2.1k

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GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS

10.4 years ago Hervé Pagès 16k

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1.9k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO

10.4 years ago Hervé Pagès 16k

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1.4k

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Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS

updated 10.4 years ago by Matthias Lienhard ▴ 240 • written 10.4 years ago by Hervé Pagès 16k

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1.2k

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go annotation organismdb

updated 9.5 years ago by James W. MacDonald 65k • written 9.5 years ago by Guido Hooiveld ★ 3.9k

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1.2k

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annotation organismdb

updated 7.6 years ago by Martin Morgan 25k • written 7.6 years ago by Guido Hooiveld ★ 3.9k

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940

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AnnotationForge OrganismData OrganismDb

10 months ago • updated 9 months ago abhisek001 • 0

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771

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clusterProfiler OrganismDb

updated 4 months ago by Guido Hooiveld ★ 3.9k • written 4 months ago by Aastha Kapoor • 0

12 results • Page 1 of 1

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

I don't really follow what you are saying. All you have to do is delete the NCBI.sqlite db and *re-run the script exactly as you did above.…

Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Votes

Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

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