Showing : organismdb • reset
3
votes
13
replies
1.5k
views
Org.db: why a supposed unique key (ID) has multiple entries?
annotationhub organismdb orgdb unsupported organisms
updated 6.3 years ago by ★ 6.7k • written 6.3 years ago by ★ 3.2k
3
votes
3
replies
2.0k
views
ggbio error: Objects of type OrganismDb not supported by autoplot
GO OrganismDb ggbio GO OrganismDb ggbio
updated 7.4 years ago by ▴ 40 • written 7.7 years ago by ▴ 120
2
votes
2
replies
835
views
How to remove IEA genes from list of GO terms?
go annotation organismdb
updated 7.6 years ago by 59k • written 7.6 years ago by ★ 3.2k
2
votes
2
replies
1.5k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter granges refseq ucsc organismdb
updated 6.5 years ago by ★ 2.8k • written 6.5 years ago by ▴ 10
1
vote
2
replies
769
views
annotation: how to use "character" for function 'select()'
annotation organismdb
updated 5.7 years ago by 25k • written 5.7 years ago by ★ 3.2k
1
vote
2
replies
1.4k
views
AnnotationForge: org.Xx.eg.db created with makeOrgPackage() is missing org.Xx.egGO object.
organismdb annotationdbi annotationforge
updated 7.6 years ago by ★ 7.2k • written 7.7 years ago by ▴ 80
1
vote
2
replies
3.4k
views
Error attaching org.Hs.eg.db package
annotationdbi annotation organismdb loadnamespace
7.5 years ago milorobertsmith • 0
0
votes
0
replies
1.5k
views
BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS
8.4 years ago Hervé Pagès 15k
0
votes
0
replies
1.5k
views
Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO
8.4 years ago Hervé Pagès 15k
0
votes
1
reply
972
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS
updated 8.4 years ago by ▴ 220 • written 8.4 years ago by 15k
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Answer: Using featureCounts and downloading Rsubread by James W. MacDonald 59k
You need to tell `BiocManager;;install` that you want to install the `Rsubread` package. ``` BiocManager::install("Rsubread") library(…
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Dear ATpoint I am exactly looking for read/gene count from BAM/SAM file either through ht-seq or feature count feature count giving me 0% s…
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There is the ncbiRefSeqSelect table that has the MANE and RefSeq Select transcripts. It's not just the MANE though. ``` > z <- makeTxDb…
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Thank you, Gordon, for your reply. I used sum(is.na(lmfit)) after lmFit, but somewhat it indicated there was no NA observations even when…
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You can use this VCF Merger Software if you want to Merge VCF files into one file. this Software easily Merge your multiple VCF files with…
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