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osat
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Missing sample
OSAT
3.5 years ago
Lluís Revilla Sancho
▴ 750
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748
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Error setting up a sample in OSAT
osat
6.2 years ago
Lluís Revilla Sancho
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Is it possible to account for location on the plate in OSAT?
osat
4.7 years ago
idavydov
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Comment: Highly DE genes but small count difference within conditions
by
Michael Love
42k
Eif3j1 is a hard case, although there is separation here, there is also substantial spread. The posterior LFC is probably not that large? `…
Comment: heatmap with batch effect
by
James W. MacDonald
67k
When you use `removeBatchEffect` it is simply computing the mean expression for each group and subtracting that out. If you have variabilit…
Comment: Highly DE genes but small count difference within conditions
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bioshot.com
• 0
These are the MA plot for design=~sex+genotype and boxplots with `boxplot(log10(counts(dds)+1))` ![MA plot][1] ![sample_boxplot][2] ![box][…
Comment: miRTarRnaseq library
by
María Calvo
• 0
Hello, Im using "Part3- Identify significant miRNA mRNA relationships for 2 time points from fold changes". In mRNA data and miRNA data, th…
Comment: heatmap with batch effect
by
tothuhien
• 0
Hi, thank you very much for your reply. Yes what you said is true. Sorry I forgot to say that this is a just subset of samples. There are m…
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GSVA ssGSEA vs. Broad implementation of ssGSEA
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Answer: How to control batch effect if Group and batch are same?
Comment: Convert HGVS Representation back to Reference Genome Coordinates
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