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outlier
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4
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outlier detection of RNAseq samples
deseq2
rnaseq
PCA
hierarchical clustering
outlier
7.3 years ago
wd
▴ 30
2
votes
3
replies
1.5k
views
RNAseq outlier is a critical sample
rnaseq
outlier
statistics
batch effect
updated 7.8 years ago by
Gordon Smyth
50k • written 7.8 years ago by
grastalt27
• 0
0
votes
2
replies
1.1k
views
Which genes are outliers in DESeq2?
DESeq2
RNAseq
outlier
updated 13 months ago by
ATpoint
★ 4.0k • written 13 months ago by
James
• 0
1
vote
8
replies
1.8k
views
[Outlier Gene removal] - One sample with outlier counts for some genes
RNAseq
DESeq2
outlier
counts
DE analysis
updated 3.9 years ago by
Kevin Blighe
★ 3.9k • written 3.9 years ago by
DcL-A
• 0
1
vote
7
replies
4.5k
views
DESeq2 outlier detection not filtering
DESeq2
outlier
RNASeq
updated 9.3 years ago by
Michael Love
41k • written 9.3 years ago by
kenneth.daily
• 0
0
votes
1
reply
419
views
Outlier removal outcome
Outlier
updated 12 months ago by
ATpoint
★ 4.0k • written 12 months ago by
sanchita.bhattacharya
• 0
1
vote
1
reply
1.3k
views
arrayQualityMetrics for outlier detection
arrayQualityMetrics
Microarray
Outlier
updated 8.4 years ago by
Wolfgang Huber
★ 13k • written 8.4 years ago by
horcsct
▴ 10
1
vote
3
replies
706
views
DE analysis outlier removal
deseq2
outlier
normalization
removal
updated 4.0 years ago by
Michael Love
41k • written 4.0 years ago by
knholm
• 0
8 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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