Showing : outliers • reset
0
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10
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Differential expression due to extreme outliers in DESeq2
deseq2 outliers
6.3 years ago paul.alto ▴ 50
8
votes
17
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14k
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WGCNA for RNA-Seq Sample Set, Outliers, and Spearman correlation
WGCNA Sample Size Outliers
updated 8.6 years ago by • 0 • written 9.2 years ago by ▴ 150
8
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2
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6.8k
views
handling outliers with DESeq2
RNASeqData DESeq2 Outliers
3.0 years ago paty ▴ 60
1
vote
3
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5.1k
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DESeq2: How to manually perform filtering and outlier detection?
deseq2 filtering outliers count outliers
updated 6.7 years ago by ★ 13k • written 6.7 years ago by ▴ 10
0
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7
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3.5k
views
Deciding on cooks cutoff value DESeq2
deseq2 differential gene expression outliers bioconductor
updated 7.2 years ago by 41k • written 7.2 years ago by ▴ 10
1
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8
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3.0k
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[DESeq2] Automatic outlier detection and replacement with continuous variables
deseq2 outliers RNAseq differential gene expression
7.1 years ago cajawe • 0
0
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4
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2.3k
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DESeq2, outlier correction, Combat, NMF
deseq2 combat outliers NMF
updated 6.9 years ago by 41k • written 6.9 years ago by • 0
0
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0
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2.2k
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Modeling count data that is zero inflated with negative binomial hurdle regression
pscl outliers
updated 9.1 years ago by 21k • written 9.1 years ago by ▴ 30
7
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8
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2.0k
views
Cook's Distance Outliers: None reported in results table and "cooksCutoff" modification has no effect
deseq2 outliers cooks cooks distance
updated 3.7 years ago by 41k • written 3.7 years ago by • 0
2
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3
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1.9k
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DESeq2 count outlier replacement from Cook's threshold
deseq2 deseq rnaseq outliers count outliers
updated 5.4 years ago by 41k • written 5.4 years ago by ▴ 10
0
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9
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1.7k
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DESeq2 influence of 2 samples
deseq2 outliers differential gene expression
updated 7.2 years ago by 41k • written 7.2 years ago by ▴ 10
1
vote
7
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1.7k
views
skewed differentially expressed gene results - DESeq2
deseq2 differential gene expression outliers
updated 5.7 years ago by ★ 7.9k • written 5.7 years ago by ▴ 20
3
votes
3
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1.6k
views
How to define an outlier array from PCA?
microarray PCA outliers sample outliers limma
updated 8.2 years ago by ★ 28k • written 8.2 years ago by ▴ 60
0
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6
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1.5k
views
weird behaviour DESeq2 1.18.1
deseq2 outliers version
updated 6.1 years ago by 41k • written 6.1 years ago by ▴ 90
0
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1
reply
1.4k
views
Deseq2 default Cooks distance threshold
Deseq2 outliers cookscutoff
updated 5.7 years ago by 41k • written 5.7 years ago by • 0
0
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4
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1.3k
views
significant genes with DESeq2 plenty of outliers and zero counts
zero counts deseq2 odd results outliers
updated 6.2 years ago by 41k • written 6.2 years ago by ▴ 90
1
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1
reply
1.3k
views
Outliers - to remove or to not remove that is the question
outliers rna microarray
updated 6.9 years ago by ▴ 420 • written 6.9 years ago by ▴ 30
0
votes
1
reply
1.2k
views
Handling outliers in Deseq2
outliers deseq2 logfoldchange
6.3 years ago lirongrossmann ▴ 80
1
vote
2
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1.1k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi normalization outliers dna methylation densityplot
5.7 years ago peter.fransquet • 0
0
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3
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1.0k
views
DESeq outlier detection for unbalanced groups
deseq2 deseq outliers
updated 7.8 years ago by 41k • written 7.8 years ago by ▴ 30
1
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2
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1.0k
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rlog vs vst for outlier identification
rlog DESeq2 vst outliers
2.3 years ago Bex • 0
0
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3
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964
views
dealing with outliers (deseq2)
maxcooks outliers zero counts DESeq2
updated 2.1 years ago by 41k • written 2.1 years ago by ▴ 10
0
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1
reply
845
views
Removal of outliers after library size correction, can I save this to my dds object?
deseq2 outliers
updated 6.1 years ago by 41k • written 6.1 years ago by • 0
0
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2
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724
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Outliers
outliers Deseq2
3.0 years ago nolwenn • 0
0
votes
1
reply
600
views
Which samples to remove from analysis based on Cook's distance outliers plot
DESeq2 cooks outliers
updated 13 months ago by ★ 4.0k • written 13 months ago by • 0
25 results • Page 1 of 1
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Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Yes, I'm working only with genes from terpenoids pathway (14 genes), so I can't use enrichGO? Can you recommend a package or something like…
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
Your awnser at Cannabis orgDb solve my problems using enrichGO by far. I'm underdegree biotechnology student, and I learning bioinformatic…
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
I'm new here, but its better now?
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Votes
Comment: Trying to use enrichGO
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
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