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overlap
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reset
2
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8
replies
5.3k
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GenomicRanges: identify overlapping regions, get intersection between each overlapping pair and add gene coordinates (start, end, strand and ids)
genomicranges
overlap
intersect
findoverlaps
6.3 years ago
Caroline Grisbach Meissner
▴ 10
2
votes
10
replies
2.2k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 8.4 years ago by
Michael Lawrence
★ 11k • written 8.4 years ago by
madsheilskov
▴ 10
4
votes
3
replies
2.1k
views
Overlap the snps
overlap
snps
granges
iranges
updated 9.6 years ago by
Michael Lawrence
★ 11k • written 9.6 years ago by
anastasiya-terskih
▴ 10
0
votes
2
replies
1.9k
views
WGCNA multiple data sets overlapping analysis
wgcna
multiple data sets
overlap
updated 6.9 years ago by
Peter Langfelder
★ 3.0k • written 6.9 years ago by
2323982403
▴ 60
5
votes
2
replies
1.9k
views
How to extract positions present in one genomic ranges object and not the other?
genomicranges
r
overlap
updated 4.0 years ago by
Kevin Blighe
★ 3.9k • written 4.0 years ago by
Grinch
• 0
0
votes
2
replies
1.6k
views
Properly constructing a hypergeometric test
overrepresentation
overlap
R
hypergeometric
updated 18 months ago by
ATpoint
★ 4.0k • written 18 months ago by
charles.foster
▴ 160
0
votes
1
reply
1.3k
views
How to find the amino acid codons corresponding to a subset of a range of genomic positions
genomicfeatures
genomicranges
cds
overlap
updated 2.4 years ago by
balajee
• 0 • written 8.4 years ago by
madsheilskov
▴ 10
1
vote
5
replies
1.3k
views
Obtain the specific range that overlap
overlap
genomicranges
range
7.4 years ago
julrodr80
▴ 30
0
votes
0
replies
625
views
How to overlap heatmaps on Gviz?
Givz
heatmap
overlap
combine information
3.9 years ago
kris.petrini
• 0
9 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
Michael Love
41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO
by
fernanda.backsouza
▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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