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p-value
•
reset
0
votes
0
replies
534
views
DEqMS function "outputResult" reports wrong sca.adj.pval
outputresult
DEqMS
sca.adj.pval
error
p-value
18 months ago
Bastian
• 0
0
votes
1
reply
939
views
What does one-sided p-value in DESeq2 mean in biological terms?
one-sided
nbinomWaldTest
p-value
meta-analysis
DESeq2
updated 2.6 years ago by
Michael Love
41k • written 2.6 years ago by
nash12
• 0
7
votes
2
replies
1.9k
views
False discovery rates in DEP
p-value
FDR
DEP
updated 2.8 years ago by
António Miguel de Jesus Domingues
▴ 490 • written 3.4 years ago by
Alexei Leliavski
▴ 60
4
votes
6
replies
1.3k
views
Question about the usage of Package, qvalue
statistical significance
p-value
q-value
FDR
qvalue
4.3 years ago
manozawa
▴ 10
1
vote
2
replies
4.0k
views
Why are my p-values deflated (GWAS)?
gwas
genesis
p-value
q-q-plot
updated 3.2 years ago by
Anna
• 0 • written 4.4 years ago by
solanum
• 0
1
vote
2
replies
892
views
IHW scale of problem
ihw
p-value
multiple hypothesis
updated 4.8 years ago by
Wolfgang Huber
★ 13k • written 4.9 years ago by
xiaotong.yao23
▴ 10
0
votes
1
reply
1.1k
views
Dependence of FDR and P-values on sample size
edgeR
FDR
p-value
Benjamini-Hochberg
Differential Analysis
updated 5.1 years ago by
Aaron Lun
★ 28k • written 5.1 years ago by
ilovesuperheroes1993
• 0
3
votes
12
replies
1.6k
views
Why did I get NA p-values in DESeq with continuous variable?
deseq2
p-value
continuous
deseq
5.2 years ago
ariel
▴ 20
2
votes
2
replies
2.0k
views
One-sided p-value from DESeq2
DESeq2
nbinomWaldTest
one-sided
p-value
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
t.kuilman
▴ 170
0
votes
0
replies
1.0k
views
Question: Problem for getting P-Value in Module-Trait Relationship in WGCNA
weighted correlation network analysis
WGCNA
P-Value
5.7 years ago
modarzi
▴ 10
0
votes
0
replies
966
views
Question: Enrichment heatmap - GOstats package of R
Gostats
p-value
6.8 years ago
salamandra
▴ 20
5
votes
6
replies
1.4k
views
pvalue of deseq2
deseq2
normalization
p-value
metaseq
updated 6.8 years ago by
Ryan C. Thompson
★ 7.9k • written 6.8 years ago by
ed_isfahani
• 0
2
votes
5
replies
3.1k
views
Limma toptable interpretation check
limma
microarray
fdr
p-value
results
updated 6.9 years ago by
Aaron Lun
★ 28k • written 6.9 years ago by
bhgyu
▴ 30
40
votes
44
replies
10k
views
Are published RNA seq data analyses often wrong in calculating p-values and FDR?
FDR
p-value
DESeq
RNA-Seq
updated 6.3 years ago by
Wade Davis
▴ 60 • written 6.9 years ago by
yjiangnan
▴ 10
2
votes
1
reply
2.0k
views
DiffBind dba.analyze() to return all differentially enriched peaks?
diffbind
p-value
differential binding analysis
fold enrichment values using diffbind
updated 7.8 years ago by
Rory Stark
★ 5.1k • written 7.8 years ago by
alisonhanh.nguyen
• 0
10
votes
14
replies
13k
views
how DESeq calculates p-value ?
deseq
differential gene expression
statistics
p-value
updated 3.1 years ago by
Kai_Qi
▴ 20 • written 8.2 years ago by
Giard
▴ 30
11
votes
20
replies
4.2k
views
Detection p-value: difference between limma and lumi packages
p-value
detection
updated 8.2 years ago by
Gordon Smyth
50k • written 8.2 years ago by
Eleni Christodoulou
▴ 150
5
votes
2
replies
2.3k
views
RankProd: Why are p-values=0?
rankprod
p-value
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
brilladine
• 0
1
vote
2
replies
2.2k
views
MEDIPS vs MACS: why does MEDIPS generate more conservative p-values
p-value
medips
MACS
updated 8.9 years ago by
Lukas Chavez
▴ 570 • written 8.9 years ago by
tptacek3050
• 0
19 results • Page
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Answer: OrgDb for maize
by
Guido Hooiveld
★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question
by
Garrett
• 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
sropri
• 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing
by
alserg
▴ 240
They are reorder in the decreasing order.
Comment: significant difference of p-values with dream() after updating VariancePartition
by
Le
• 0
Thanks for your reply @gabrielhoffman ! I've been trying to isolate the changes, and v1.32.5 had the same results as v1.33.1 while v1.30.0…
Votes
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
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