Bioconductor P-value

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536

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outputresult DEqMS sca.adj.pval error p-value

18 months ago Bastian • 0

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946

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one-sided nbinomWaldTest p-value meta-analysis DESeq2

updated 2.7 years ago by Michael Love 41k • written 2.7 years ago by nash12 • 0

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1.9k

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p-value FDR DEP

updated 2.8 years ago by António Miguel de Jesus Domingues ▴ 490 • written 3.4 years ago by Alexei Leliavski ▴ 60

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13k

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deseq differential gene expression statistics p-value

updated 3.1 years ago by Kai_Qi ▴ 20 • written 8.2 years ago by Giard ▴ 30

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4.0k

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gwas genesis p-value q-q-plot

updated 3.2 years ago by Anna • 0 • written 4.4 years ago by solanum • 0

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1.3k

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statistical significance p-value q-value FDR qvalue

4.3 years ago manozawa ▴ 10

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901

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ihw p-value multiple hypothesis

updated 4.9 years ago by Wolfgang Huber ★ 13k • written 4.9 years ago by xiaotong.yao23 ▴ 10

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1.1k

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edgeR FDR p-value Benjamini-Hochberg Differential Analysis

updated 5.1 years ago by Aaron Lun ★ 28k • written 5.1 years ago by ilovesuperheroes1993 • 0

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1.6k

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deseq2 p-value continuous deseq

5.2 years ago ariel ▴ 20

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2.0k

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DESeq2 nbinomWaldTest one-sided p-value

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by t.kuilman ▴ 170

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1.0k

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weighted correlation network analysis WGCNA P-Value

5.7 years ago modarzi ▴ 10

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10k

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FDR p-value DESeq RNA-Seq

updated 6.4 years ago by Wade Davis ▴ 60 • written 6.9 years ago by yjiangnan ▴ 10

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971

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Gostats p-value

6.8 years ago salamandra ▴ 20

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1.4k

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deseq2 normalization p-value metaseq

updated 6.8 years ago by Ryan C. Thompson ★ 7.9k • written 6.8 years ago by ed_isfahani • 0

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3.1k

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limma microarray fdr p-value results

updated 6.9 years ago by Aaron Lun ★ 28k • written 6.9 years ago by bhgyu ▴ 30

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2.0k

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diffbind p-value differential binding analysis fold enrichment values using diffbind

updated 7.9 years ago by Rory Stark ★ 5.2k • written 7.9 years ago by alisonhanh.nguyen • 0

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4.2k

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p-value detection

updated 8.2 years ago by Gordon Smyth 50k • written 8.3 years ago by Eleni Christodoulou ▴ 150

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2.3k

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rankprod p-value

updated 8.8 years ago by James W. MacDonald 65k • written 8.8 years ago by brilladine • 0

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2.2k

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p-value medips MACS

updated 8.9 years ago by Lukas Chavez ▴ 570 • written 8.9 years ago by tptacek3050 • 0

19 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0