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Job:
Postdoc on integrating and analyzing new transcriptome types in the Bgee database
rnaseq
data integration
single-cell
pacbio
across species
Job
6.5 years ago
bgee
• 0
2
votes
5
replies
2.1k
views
Gviz - display/indicate soft-clipped bases - indicate supplementary alignments
gviz
bam
pacbio
updated 8.3 years ago by
florian.hahne@novartis.com
★ 1.6k • written 8.3 years ago by
thackl
• 0
0
votes
1
reply
1.8k
views
How to read in PacBio .bam.pbi file
pacbio
pbi
6.4 years ago
Frocha
▴ 20
4
votes
3
replies
1.7k
views
The ShortRead package does not handle quality score '~' (Q=93) found in PacBio fastq files
shortread
pacbio
fastq
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
benjamin.j.callahan
▴ 50
0
votes
2
replies
730
views
Does the knock down cause transcriptome-wide differences in isoform usage for Pac-Bio data?
pacbio
isoform
written 21 months ago by
lhaiyan3
• 0
5 results • Page
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Comment: Student
by
shepherl
4.0k
Next time you post please use a more informative title that relates to the issue you are experiencing or minmally the package you wish to a…
Comment: Should tSNE from biol. replicates look alike?
by
cynthiamoniz1122
• 0
good ideal
Answer: Trying to convert ATACseq annotations of non-model species into human orthologs,
by
James W. MacDonald
67k
I would use the mapper I note above, and build your own `OrgDb`, then do the GO analysis directly. ``` > library(AnnotationForge) > option…
Comment: Trying to convert ATACseq annotations of non-model species into human orthologs,
by
James W. MacDonald
67k
There's already an `OrgDb` for this species on the AnnotationHub that hypothetically would be ideal, but there are almost no GO mappings, s…
Answer: Trying to convert ATACseq annotations of non-model species into human orthologs,
by
James W. MacDonald
67k
It's probably not going to work that well using that species, but you can give it a shot. Note that you don't appear to have any good IDs. …
Votes
Answer: Trying to convert ATACseq annotations of non-model species into human orthologs,
Answer: Trying to convert ATACseq annotations of non-model species into human orthologs,
Answer: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
A: Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
Comment: clusterProfiler: BgRatio N value does not match the size of the gene universe th
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