Biostar Pacbio

Showing : pacbio • reset

0

votes

28

replies

1.6k

views

rnaseq data integration single-cell pacbio across species Job

4.4 years ago bgee • 0

2

votes

5

replies

1.2k

views

gviz bam pacbio

updated 6.2 years ago by florian.hahne@novartis.com ★ 1.6k • written 6.2 years ago by thackl • 0

0

votes

1

reply

824

views

pacbio pbi

4.3 years ago Frocha ▴ 10

4

votes

3

replies

800

views

shortread pacbio fastq

updated 4.5 years ago by Martin Morgan 25k • written 4.5 years ago by benjamin.j.callahan ▴ 50

4 results • Page 1 of 1

Recent ...

Replies

Comment: using DESeq2 for ATAC analyses by eric.kern13 ▴ 10

To expand on what's written here: deseq2 can achieve roughly constant variance $C$ across genes by setting the per-gene dispersion $\phi_j$…

Comment: TPM normalization starting with read counts by ATpoint ★ 1.4k

Neither edgeR nor DESeq2 output TPM directly. TPM is easy to calculate though if counts and appropriate length info is available (https://s…

Comment: error running UniProt.ws by davi.vuko • 0

I still get the same result as above, should running BiocManager::install() do the trick?

Answer: Adding custom transcript to Salmon index by ATpoint ★ 1.4k

Yes, you would add the sequence to the reference transcriptome that is used for the gentrome construction. Simply make a separate fasta fil…

Comment: IsoformSwitchAnalyzeR package on mouse data by bpshtiwan ▴ 10

Hello Ryan, Also, I am not able to find esemble file that has haplotype info in it. Kindly, have you solved the problem? Best

Votes

A: Importance of Order in Design Formula

remove microarray batch effects using Limma

On empirical Bayes of edgeR

Answer: CQN to DESeq2

Comment: package 'BiocInstaller' is not available (for R version 3.4.4)

Awards • All

Scholar to Thomas Carroll ▴ 410