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package
•
reset
2
votes
8
replies
3.6k
views
Which R version is needed for tximport package?
tximport
package
R version
install tximport
3.7 years ago
harelarik
▴ 60
0
votes
8
replies
6.7k
views
not able to install bioconductor packages
package
bioconductor
new version
7.2 years ago
farahqureshi5
• 0
1
vote
7
replies
1.8k
views
Ballgown object construction error
ballgown
scan
error
package
6.9 years ago • updated 6.8 years ago
spaque57
• 0
4
votes
7
replies
1.9k
views
Does Rhtslib currently work on Windows?
Rhtslib
htslib
package
updated 6.7 years ago by
Martin Morgan
25k • written 6.7 years ago by
Shian Su
▴ 40
2
votes
7
replies
4.5k
views
Installing Local packages in Bioconductor
package
updated 8 months ago by
Boxun
• 0 • written 23 months ago by
BioC123
• 0
1
vote
6
replies
2.2k
views
Detect short tandem repetitions from bam file
bam
short tandem repetitions
package
8.5 years ago
Pau Marc Muñoz Torres
▴ 20
9
votes
6
replies
1.7k
views
package specifically dedicated to a manuscript
package
guidelines
9.3 years ago
petyuk
▴ 70
0
votes
6
replies
4.9k
views
installing older versions of packages
package
2.9 years ago
zuljiamel1991
▴ 10
1
vote
6
replies
2.9k
views
how to create a NEWS file in R package
news
package
updated 5.8 years ago by
ahlammajid352
• 0 • written 5.8 years ago by
xyluo1991
• 0
1
vote
5
replies
2.0k
views
Tissue Specificity R-package
tissue
specificity
r
package
package development
updated 6.2 years ago by
jaro.slamecka
▴ 140 • written 6.2 years ago by
BioinfGuru
▴ 30
2
votes
5
replies
1.4k
views
Submitting R packages with external data
package
updated 9.2 years ago by
Andrzej Oleś
▴ 750 • written 9.2 years ago by
vittorio.fortino
• 0
0
votes
5
replies
1.6k
views
Using S4Vectors within a package
Package
s4vectors
updated 7.5 years ago by
Martin Morgan
25k • written 7.5 years ago by
my4
▴ 10
0
votes
4
replies
924
views
CDF still not found
CDF
Package
updated 4.5 years ago by
James W. MacDonald
65k • written 4.5 years ago by
ekl
• 0
0
votes
4
replies
3.6k
views
Biostrings throwing error
biostrings
installation
package
keepNA
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
prim-and-proper
• 0
1
vote
4
replies
4.5k
views
Unable to install BiocStyle: not available (for R version 3.5.0)
package
not available (for R version 3.5.0)
BiocStyle
updated 5.9 years ago by
Mike Smith
★ 6.5k • written 5.9 years ago by
nereidaramirez
• 0
2
votes
4
replies
1.2k
views
Bioconductor package development
package
R
software
development
updated 3.6 years ago by
Martin Morgan
25k • written 3.6 years ago by
Dany
• 0
1
vote
4
replies
727
views
Submitting BSgenome package for a new assembly
bsgenome
GenomicFeatures
package
updated 10 months ago by
Hervé Pagès
16k • written 11 months ago by
Manish
• 0
5
votes
3
replies
1.6k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
8.9 years ago
flying-sheep
▴ 10
1
vote
3
replies
1.2k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 5.5 years ago by
Wolfgang Huber
★ 13k • written 5.5 years ago by
shepherl
3.8k
2
votes
3
replies
1.4k
views
News:
List of Deprecated Packages for Bioc3.8
package
release
deprecate
News
5.7 years ago
shepherl
3.8k
2
votes
3
replies
2.8k
views
package for sex determination using sam/bam files
software
sex
package
8.5 years ago
Pau Marc Muñoz Torres
▴ 20
12
votes
3
replies
6.0k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
6.1 years ago
lloyd.izard
▴ 80
0
votes
3
replies
1.7k
views
More Bioconductor Package Installation Problems
package
symlinks
directories
installation
Dropbox
updated 2.1 years ago by
Hervé Pagès
16k • written 2.1 years ago by
jose
▴ 10
0
votes
3
replies
1.9k
views
Affymetrix ReadAffy() can't read my CEL file
microarray
affy
cancer
hgu133plus2
package
updated 9.2 years ago by
James W. MacDonald
65k • written 9.2 years ago by
kanacska
▴ 10
3
votes
3
replies
912
views
Package fail to build
package
OpenStats
updated 2.0 years ago by
Hervé Pagès
16k • written 2.0 years ago by
hamedhm
• 0
0
votes
3
replies
2.8k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation
EnsDb.Hsapiens.v86
Bioconductor
package
ensembldb
22 months ago • updated 21 months ago
elmfinds
• 0
4
votes
3
replies
2.8k
views
Is there an R package providing an R API for IGV / igvtools out there?
package
IGV
updated 8.1 years ago by
Paul Shannon
▴ 470 • written 8.1 years ago by
Henrik Bengtsson
★ 2.4k
0
votes
3
replies
2.5k
views
DLL maps not found while compiling package in Windows machine
package
compilation error
dll
windows
8.6 years ago
Miguel Juliá
• 0
1
vote
3
replies
1.9k
views
question about the EdgeR package: additive models and blocking
package
updated 9.1 years ago by
Gordon Smyth
50k • written 9.1 years ago by
Fix Ace
▴ 100
3
votes
3
replies
1.3k
views
Repeated error loading DESqe2 - package xxx not found
deseq2
package
software error
updated 4.1 years ago by
Martin Morgan
25k • written 4.2 years ago by
DcL-A
• 0
1
vote
3
replies
967
views
new submission : waiting duration
package
9.3 years ago
kmezhoud
▴ 10
0
votes
2
replies
1.5k
views
GOenrichmentAnalysis of WGCNA mocules in Zea mays
annotation
wgcna
package
6.2 years ago
j.baldauf
• 0
1
vote
2
replies
1.1k
views
New package version submission
package
submit package
package updates
7.9 years ago
francescodc87
• 0
0
votes
2
replies
1.1k
views
Weighted matrix from igraph to graphNEL
package
7.4 years ago
antonia91.barile
• 0
0
votes
2
replies
846
views
Update a package in a older relase
package
updated 8.9 years ago by
James W. MacDonald
65k • written 8.9 years ago by
gobbi.andrea
• 0
1
vote
2
replies
1.1k
views
R packages old versions
R
deseq2
package
updated 6.5 years ago by
Michael Love
41k • written 6.5 years ago by
minie
• 0
0
votes
2
replies
2.0k
views
Creating a qPCRset object from a text file
qPCRset object
nondetects
r
package
txt
updated 6 months ago by
Nat.Nataren
• 0 • written 6.3 years ago by
s.m.may
• 0
3
votes
2
replies
923
views
Prevent "New version" message to appear
package
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
nick
▴ 10
0
votes
2
replies
1.2k
views
R package for molecule interactions?
r
package
function
interactions
8.5 years ago
amyfm
▴ 10
0
votes
2
replies
1.1k
views
News:
Final List of Deprecated Packages for Bioc3.7
deprecate
package
release
News
written 6.1 years ago by
shepherl
3.8k
1
vote
2
replies
1.0k
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq
r
package
updated 5.9 years ago by
emmascottgm
• 0 • written 5.9 years ago by
rcavalca
▴ 140
0
votes
2
replies
916
views
Forking a package/install from source
install
package
fork
bugfix
updated 2.0 years ago by
James W. MacDonald
65k • written 2.0 years ago by
Jeff
• 0
0
votes
2
replies
3.8k
views
package ‘ComplexHeatmap’ is not available
software error
package
updated 9.0 years ago by
Guangchuang Yu
★ 1.2k • written 9.0 years ago by
duygu.ozcelik
• 0
1
vote
2
replies
872
views
Gallus gallus package genome update release
genome
novel
package
release
updated 5.2 years ago by
James W. MacDonald
65k • written 5.2 years ago by
pertille
• 0
0
votes
2
replies
705
views
New package function redistribution
package
license
C
R
4.1 years ago
adam.eleni1
• 0
3
votes
2
replies
2.0k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2
PackageTypeData
package
Annotation
15 months ago • updated 14 months ago
m-bihie
▴ 10
0
votes
2
replies
869
views
Confusion error from automated checks for package submission
package
submiss
Submission
updated 3.0 years ago by
Hervé Pagès
16k • written 3.0 years ago by
sara.stankiewicz
• 0
1
vote
2
replies
1.2k
views
How to build a non "gene-centered" annotation package using SQLForge ?
annotation
package
custom
microarray
9.3 years ago • updated 9.2 years ago
becker.jeremie
• 0
2
votes
2
replies
6.1k
views
package install issue (ubuntu 14.04, R 3.2.1)
package
installation
8.8 years ago
doublehelixlf
▴ 10
2
votes
1
reply
927
views
Curated Data Package in Bioconductor
package
data
5.7 years ago
divyswar01
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from `str(ortologos_filtrados)` data.frame': 14 obs…
Answer: Cannabis OrgDb
by
Guido Hooiveld
★ 3.9k
> library(AnnotationHub) > hub <- AnnotationHub() snapshotDate(): 2023-10-23 > query(hub, c("cannabis","orgdb") ) …
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
To increase readability: could you please reformat your post? Select the R--code, and click the `CODE` button... the 5th button.
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from str(ortologos_filtrados) data.frame': 14 obs. …
Votes
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
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41k
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shepherl
3.8k
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Gordon Smyth
50k
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taur.vil
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Yuan Tian
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