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package
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13
votes
1
reply
2.9k
views
News:
Updated Bioconductor Package Submission Policy
package
submission
News
8.2 years ago
Martin Morgan
25k
12
votes
3
replies
6.0k
views
Error while uploading Bioconductor packages - R Shiny
shiny
package
deploy
6.0 years ago
lloyd.izard
▴ 80
9
votes
6
replies
1.7k
views
package specifically dedicated to a manuscript
package
guidelines
9.2 years ago
petyuk
▴ 70
6
votes
0
replies
1.1k
views
News:
New Package Submission Process
news
package
submit package
News
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
Valerie Obenchain
★ 6.8k
5
votes
3
replies
1.6k
views
BiocCheck: REQUIRED: vignette sources in vignettes/ directory (for custom vignettebuilder)
package
bioconductor
bioc-devel
developers
8.9 years ago
flying-sheep
▴ 10
4
votes
3
replies
2.8k
views
Is there an R package providing an R API for IGV / igvtools out there?
package
IGV
updated 8.1 years ago by
Paul Shannon
▴ 470 • written 8.1 years ago by
Henrik Bengtsson
★ 2.4k
4
votes
7
replies
1.9k
views
Does Rhtslib currently work on Windows?
Rhtslib
htslib
package
updated 6.6 years ago by
Martin Morgan
25k • written 6.6 years ago by
Shian Su
▴ 40
3
votes
2
replies
906
views
Prevent "New version" message to appear
package
updated 6.2 years ago by
Martin Morgan
25k • written 6.2 years ago by
nick
▴ 10
3
votes
3
replies
1.3k
views
Repeated error loading DESqe2 - package xxx not found
deseq2
package
software error
updated 4.1 years ago by
Martin Morgan
25k • written 4.1 years ago by
DcL-A
• 0
3
votes
3
replies
872
views
Package fail to build
package
OpenStats
updated 23 months ago by
Hervé Pagès
16k • written 23 months ago by
hamedhm
• 0
3
votes
2
replies
2.0k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2
PackageTypeData
package
Annotation
14 months ago
m-bihie
▴ 10
2
votes
1
reply
907
views
Curated Data Package in Bioconductor
package
data
5.6 years ago
divyswar01
• 0
2
votes
5
replies
1.4k
views
Submitting R packages with external data
package
updated 9.2 years ago by
Andrzej Oleś
▴ 750 • written 9.2 years ago by
vittorio.fortino
• 0
2
votes
2
replies
6.0k
views
package install issue (ubuntu 14.04, R 3.2.1)
package
installation
8.7 years ago
doublehelixlf
▴ 10
2
votes
3
replies
2.8k
views
package for sex determination using sam/bam files
software
sex
package
8.5 years ago
Pau Marc Muñoz Torres
▴ 20
2
votes
8
replies
3.6k
views
Which R version is needed for tximport package?
tximport
package
R version
install tximport
3.6 years ago
harelarik
▴ 60
2
votes
4
replies
1.2k
views
Bioconductor package development
package
R
software
development
updated 3.5 years ago by
Martin Morgan
25k • written 3.5 years ago by
Dany
• 0
2
votes
7
replies
4.3k
views
Installing Local packages in Bioconductor
package
updated 7 months ago by
Boxun
• 0 • written 23 months ago by
BioC123
• 0
2
votes
3
replies
1.3k
views
News:
List of Deprecated Packages for Bioc3.8
package
release
deprecate
News
5.7 years ago
shepherl
3.8k
1
vote
4
replies
693
views
Submitting BSgenome package for a new assembly
bsgenome
GenomicFeatures
package
updated 10 months ago by
Hervé Pagès
16k • written 10 months ago by
Manish
• 0
1
vote
2
replies
1.0k
views
R packages old versions
R
deseq2
package
updated 6.4 years ago by
Michael Love
41k • written 6.4 years ago by
minie
• 0
1
vote
6
replies
2.2k
views
Detect short tandem repetitions from bam file
bam
short tandem repetitions
package
8.4 years ago
Pau Marc Muñoz Torres
▴ 20
1
vote
5
replies
2.0k
views
Tissue Specificity R-package
tissue
specificity
r
package
package development
updated 6.1 years ago by
jaro.slamecka
▴ 140 • written 6.1 years ago by
BioinfGuru
▴ 20
1
vote
4
replies
4.5k
views
Unable to install BiocStyle: not available (for R version 3.5.0)
package
not available (for R version 3.5.0)
BiocStyle
updated 5.8 years ago by
Mike Smith
★ 6.5k • written 5.8 years ago by
nereidaramirez
• 0
1
vote
7
replies
1.8k
views
Ballgown object construction error
ballgown
scan
error
package
6.8 years ago
spaque57
• 0
1
vote
3
replies
951
views
new submission : waiting duration
package
9.3 years ago
kmezhoud
▴ 10
1
vote
2
replies
979
views
Request to remove requirement for gr to have widths 1 in BSseq constructor
bsseq
r
package
updated 5.9 years ago by
emmascottgm
• 0 • written 5.9 years ago by
rcavalca
▴ 140
1
vote
2
replies
1.1k
views
New package version submission
package
submit package
package updates
7.8 years ago
francescodc87
• 0
1
vote
6
replies
2.9k
views
how to create a NEWS file in R package
news
package
updated 5.7 years ago by
ahlammajid352
• 0 • written 5.7 years ago by
xyluo1991
• 0
1
vote
0
replies
933
views
News:
Shields/Badges on Package landing pages
package
badges
shields
News
6.4 years ago
shepherl
3.8k
1
vote
1
reply
1.1k
views
Large example data with Bioconductor package
package
updated 6.4 years ago by
shepherl
3.8k • written 6.4 years ago by
Marek Gierlinski
▴ 30
1
vote
3
replies
1.2k
views
News:
Initial List of Deprecated Package Bioc 3.9
package
deprecate
release
News
updated 5.4 years ago by
Wolfgang Huber
★ 13k • written 5.4 years ago by
shepherl
3.8k
1
vote
2
replies
859
views
Gallus gallus package genome update release
genome
novel
package
release
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
pertille
• 0
1
vote
3
replies
1.9k
views
question about the EdgeR package: additive models and blocking
package
updated 9.0 years ago by
Gordon Smyth
50k • written 9.0 years ago by
Fix Ace
▴ 100
1
vote
1
reply
927
views
simplifyEnrichment install error
package
Rversion
Install
simplifyEnrichment
updated 3.0 years ago by
shepherl
3.8k • written 3.0 years ago by
ch_el
▴ 10
1
vote
2
replies
1.2k
views
How to build a non "gene-centered" annotation package using SQLForge ?
annotation
package
custom
microarray
9.2 years ago
becker.jeremie
• 0
1
vote
1
reply
9.0k
views
Problems to install a package - Ubuntu
ubuntu
package
installation
varianttools
updated 8.9 years ago by
James W. MacDonald
65k • written 8.9 years ago by
lelemraposo
• 0
0
votes
3
replies
2.7k
views
Can't Install ensembldb and EnsDb.Hsapiens.v86
installation
EnsDb.Hsapiens.v86
Bioconductor
package
ensembldb
21 months ago
elmfinds
• 0
0
votes
3
replies
1.9k
views
Affymetrix ReadAffy() can't read my CEL file
microarray
affy
cancer
hgu133plus2
package
updated 9.1 years ago by
James W. MacDonald
65k • written 9.1 years ago by
kanacska
▴ 10
0
votes
2
replies
3.8k
views
package ‘ComplexHeatmap’ is not available
software error
package
updated 9.0 years ago by
Guangchuang Yu
★ 1.2k • written 9.0 years ago by
duygu.ozcelik
• 0
0
votes
1
reply
1.9k
views
Graph viewer for Reactome Pathways
bioconductor
package
reactome
graph
updated 8.8 years ago by
Johannes Rainer
★ 2.0k • written 8.8 years ago by
Deepak Tanwar
▴ 10
0
votes
2
replies
836
views
Update a package in a older relase
package
updated 8.8 years ago by
James W. MacDonald
65k • written 8.8 years ago by
gobbi.andrea
• 0
0
votes
0
replies
981
views
CNTools package lead R to abort
CNTools
package
8.8 years ago
sircoulombf
• 0
0
votes
4
replies
3.6k
views
Biostrings throwing error
biostrings
installation
package
keepNA
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
prim-and-proper
• 0
0
votes
3
replies
2.4k
views
DLL maps not found while compiling package in Windows machine
package
compilation error
dll
windows
8.5 years ago
Miguel Juliá
• 0
0
votes
2
replies
1.2k
views
R package for molecule interactions?
r
package
function
interactions
8.4 years ago
amyfm
▴ 10
0
votes
1
reply
766
views
I want to submit a package to Bioconductor by Github. But it always comes out an inexplicable problems
package
updated 7.8 years ago by
Martin Morgan
25k • written 7.8 years ago by
taosheng.x
• 0
0
votes
1
reply
1.4k
views
ChAMP package library loading error
methylation
package
7.7 years ago
sdeshpande
• 0
0
votes
1
reply
1.2k
views
How to submit a package hosted on Bitbucket
package
submission
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
richierocks
▴ 40
0
votes
5
replies
1.5k
views
Using S4Vectors within a package
Package
s4vectors
updated 7.4 years ago by
Martin Morgan
25k • written 7.4 years ago by
my4
▴ 10
50 results • Page
1 of 1
Recent ...
Replies
Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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James W. MacDonald
65k
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50k
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