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padj
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0
votes
5
replies
2.5k
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NA in padj in the DEXSeq package
dexseq
padj
8.3 years ago
gil.hornung
• 0
6
votes
2
replies
4.8k
views
All same padj of contrast results in the DESeq2
deseq2
padj
contrast
results
updated 8.7 years ago by
Michael Love
41k • written 8.7 years ago by
jjinhyoungkim
▴ 20
1
vote
3
replies
4.2k
views
deseq: all padj values equal to 1
deseq
padj
updated 9.0 years ago by
Michael Love
41k • written 9.3 years ago by
ccheung
• 0
0
votes
1
reply
1.5k
views
Found consistent padj values for all the samples in DESeq2 R Package
deseq2
padj
Benjamini and hochberg consequences
affy
7.0 years ago
jignashapatel10
• 0
2
votes
5
replies
5.2k
views
DESEQ2 'results' filter by value for multiple conditions (contrast off?)
deseq2
results
contrast
padj
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
courtney.stairs
• 0
1
vote
5
replies
2.3k
views
Constant High Padj Values
deseq2
differential gene expression
multiple factor design
padj
updated 6.4 years ago by
Michael Love
41k • written 6.4 years ago by
le.alex.chang
• 0
0
votes
1
reply
595
views
How to set threshold of padj value in DeSeq2
DESeq2
padj
default
updated 15 months ago by
James W. MacDonald
65k • written 15 months ago by
Serena
• 0
0
votes
1
reply
1.4k
views
Change the FDR in DEXSeq
FDR
padj
updated 7.5 years ago by
Jakub
▴ 50 • written 7.5 years ago by
arom2
• 0
0
votes
1
reply
1.8k
views
Different padj value after multiple testing
deseq2
padj
multiple comparisons
differential gene expression
updated 7.1 years ago by
Michael Love
41k • written 7.1 years ago by
tarun2
• 0
9 results • Page
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Recent ...
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Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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