Bioconductor Paired analysis

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rna seq trimmomatic trimming adapter trimming paired analysis

4.6 years ago Mozart ▴ 30

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1.2k

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limma technical replicates biological replicates paired analysis

updated 4.6 years ago by Aaron Lun ★ 28k • written 4.6 years ago by paul.alto ▴ 50

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595

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edger rnaseq paired analysis design matrix

4.7 years ago svlachavas ▴ 820

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579

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limma paired analysis

updated 4.8 years ago by Gordon Smyth 48k • written 4.8 years ago by annadv77 • 0

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882

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DESEq2 paired analysis factor levels

updated 5.6 years ago by Michael Love 41k • written 5.6 years ago by luisa.bresadola • 0

5 results • Page 1 of 1

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Comment: Why is DMRcate not available for Bioconductor version 3.18? by Daniel E. Weeks ▴ 20

Thank you for the explanation and contacting the DSS package authors.

Comment: Why is DMRcate not available for Bioconductor version 3.18? by shepherl 3.6k

The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…

Answer: GOslim missing GO term by James W. MacDonald 64k

I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…

Answer: Obtaining rsIDs with ENSG and variant ID information by Robert Castelo ★ 3.0k

You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…

Comment: DESeq2 - groups with biological replicates from the same patient by James W. MacDonald 64k

If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…

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Comment: Why is DMRcate not available for Bioconductor version 3.18?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Awards • All

Scholar to James W. MacDonald 64k

Scholar to Assa Yeroslaviz ★ 1.5k