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updated 2.2 years ago by
Gordon Smyth
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written 2.2 years ago by
annadv77
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updated 3.1 years ago by
Michael Love
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written 3.1 years ago by
luisa.bresadola
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Comment: Tied Ranks in fgsea
by
Guido Hooiveld
★
2.9k
The message strongly suggests that the vast majority of the genes in your list have exactly the same value/ranking (i.e. log2FC). This woul…
Comment: Need help in running GO analysis
by
Rishav
▴
10
Yes, I already solved that problem. I understand what was the problem .
Thank you so much for your time
Answer: DESeq2 ashr with and without reflevels generate different log2FoldChanges
by
Michael Love
32k
*"How is it possible to get different log2FC using lfcShrink (ashr) by defining relevels compared to no relevels defining?"*
This has be…
Comment: After having the output from SingleR for cell type annotation, what's the next s
by
sofiagreen72211
▴
10
I believe, you have a seurat object with 3 groups with barcodes. If this is the case, it's straight forward, get singleR predictions on eac…
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Guido Hooiveld
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Henrik Bengtsson
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Gordon Smyth
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France, 13 minutes ago
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