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Showing :
paired analysis
•
reset
1
vote
2
replies
1.7k
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adapter trimming paired vs unpaired reads
rna seq
trimmomatic
trimming
adapter trimming
paired analysis
4.6 years ago
Mozart
▴ 30
2
votes
4
replies
1.2k
views
What's the best way to use "semi" technical replicates with biological replicates?
limma
technical replicates
biological replicates
paired analysis
updated 4.6 years ago by
Aaron Lun
★ 28k • written 4.6 years ago by
paul.alto
▴ 50
0
votes
0
replies
595
views
Paired DE analysis in edgeR with trios of samples while blocking for various confounders
edger
rnaseq
paired analysis
design matrix
4.7 years ago
svlachavas
▴ 820
0
votes
2
replies
579
views
Comparing groups with paired samples by using limma
limma
paired analysis
updated 4.8 years ago by
Gordon Smyth
48k • written 4.8 years ago by
annadv77
• 0
1
vote
8
replies
882
views
Unexpected differences in results from paired analysis with DESeq2
DESEq2
paired analysis
factor levels
updated 5.6 years ago by
Michael Love
41k • written 5.6 years ago by
luisa.bresadola
• 0
5 results • Page
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Replies
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
Daniel E. Weeks
▴ 20
Thank you for the explanation and contacting the DSS package authors.
Comment: Why is DMRcate not available for Bioconductor version 3.18?
by
shepherl
3.6k
The DSS package authors just need to add `edgeR` to their Suggest of their DESCRIPTION. They have been contacted about it but have not acte…
Answer: GOslim missing GO term
by
James W. MacDonald
64k
I think it's because that GO term isn't an offspring of any term in the GO slim you are downloading. ``` > ids<- "GO:0002831" > slim <…
Answer: Obtaining rsIDs with ENSG and variant ID information
by
Robert Castelo
★ 3.0k
You should first and foremost find out what was the human reference genome version from which your dataset was derived. Assuming this was G…
Comment: DESeq2 - groups with biological replicates from the same patient
by
James W. MacDonald
64k
If by clustering you mean there might be a within-subject correlation, then yes it's a possibility. But you cannot control for that using a…
Votes
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: Why is DMRcate not available for Bioconductor version 3.18?
Comment: limma::voom vs edgeR::voomLmFit - when to use?
Answer: limma::voom vs edgeR::voomLmFit - when to use?
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Endre Sebestyén
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ramonfallon
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