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pairwisealignment
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1.1k
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Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
5.7 years ago
ktehmsen
• 0
0
votes
3
replies
1.4k
views
How to find multiple overlaps with pairwiseAlignment()?
biostrings
pairwisealignment
updated 6.2 years ago by
Hervé Pagès
16k • written 6.2 years ago by
kgorczak
▴ 10
0
votes
4
replies
1.3k
views
Query with Biostrings pairwise alignment output positon
biostrings
alignment
pairwisealignment
updated 6.4 years ago by
Hervé Pagès
16k • written 6.4 years ago by
dhwani2410
• 0
1
vote
2
replies
3.5k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment
SNP
dnasequence
7.2 years ago
lordbleys
• 0
0
votes
0
replies
987
views
Translate to aminoacid, align pairwise and un-translate back to DNA
translation
pairwisealignment
7.7 years ago
igferres
• 0
0
votes
1
reply
865
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 7.8 years ago by
Hervé Pagès
16k • written 7.8 years ago by
oliwindram
▴ 10
3
votes
2
replies
1.4k
views
pairwiseAlignments coordinate mapping?
biostrings
pairwisealignment
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
Steve Lianoglou
★ 13k
2
votes
1
reply
1.0k
views
Error in score() function on pairwiseAlignment()
biostrings
pairwisealignment
updated 8.0 years ago by
shepherl
3.8k • written 8.0 years ago by
jdydu
• 0
0
votes
1
reply
1.3k
views
pairwiseAlignment() - Similarity NA% ?
biostrings
pairwisealignment
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
boris.steipe
• 0
2
votes
3
replies
1.2k
views
indels located at the edges of subject and Biostrings pairwiseAlignment function
pairwisealignment
biostrings
8.6 years ago
vincent.plagnol
▴ 10
0
votes
2
replies
1.6k
views
inconsistent pairwiseAlignment behaviour (Biostrings) with multiple alignments with identical scores
biostrings
pairwisealignment
8.6 years ago
vincent.plagnol
▴ 10
4
votes
5
replies
2.6k
views
global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
Biostrings
pairwiseAlignment
updated 9.5 years ago by
Hervé Pagès
16k • written 9.5 years ago by
branislav misovic
▴ 120
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Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
shuwangxinze1996
• 0
Hello, I used 48 cpus and 320G of memory to run this program. My bam files size are 7-9G, wonder how much CPU and memory is enough?
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
This comment helps.
Comment: DESeq2 output used for PCA plot on R studio
by
Kevin Blighe
★ 3.9k
I am not sure how your comment helps here?
Votes
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
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Answer: How to retrieve gene ontology GO class from gene list?
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