Bioconductor Pairwisealignment

Showing : pairwisealignment • reset

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SAM samtools pairwisealignment alignment blastn

6.5 years ago ktehmsen • 0

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biostrings pairwisealignment

updated 7.0 years ago by Hervé Pagès 16k • written 7.0 years ago by kgorczak ▴ 10

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biostrings alignment pairwisealignment

updated 7.1 years ago by Hervé Pagès 16k • written 7.1 years ago by dhwani2410 • 0

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pairwisealignment SNP dnasequence

7.9 years ago lordbleys • 0

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translation pairwisealignment

8.5 years ago igferres • 0

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pairwisealignment indel

updated 8.6 years ago by Hervé Pagès 16k • written 8.6 years ago by oliwindram ▴ 10

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1.7k

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biostrings pairwisealignment

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Steve Lianoglou ★ 13k

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biostrings pairwisealignment

updated 8.7 years ago by shepherl 4.1k • written 8.7 years ago by jdydu • 0

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biostrings pairwisealignment

updated 9.3 years ago by Hervé Pagès 16k • written 9.3 years ago by boris.steipe • 0

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pairwisealignment biostrings

9.3 years ago vincent.plagnol ▴ 10

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biostrings pairwisealignment

9.4 years ago • updated 9.3 years ago vincent.plagnol ▴ 10

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3.1k

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Biostrings pairwiseAlignment

updated 10.2 years ago by Hervé Pagès 16k • written 10.2 years ago by branislav misovic ▴ 120

12 results • Page 1 of 1

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Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…

Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k

Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…

Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0

Thank you so much ! It's working !

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k

Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…

Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k

Thanks @fep29! ^^

Votes

A: DESeq2 interaction term

Comment: Recount3 data correspond to TCGA data

Answer: DESeq2- merging technical vs biological replicates

Answer: SingleCellExperiment convenience function for metadata+expression?

How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.

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Popular Question to Robert Castelo ★ 3.4k

Popular Question to Robert Ivanek ▴ 750