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pairwisealignment
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Question about converting SAM alignment file data to a visual text alignment (e.g., resembling blastn alignment)
SAM
samtools
pairwisealignment
alignment
blastn
5.6 years ago
ktehmsen
• 0
0
votes
3
replies
1.3k
views
How to find multiple overlaps with pairwiseAlignment()?
biostrings
pairwisealignment
updated 6.2 years ago by
Hervé Pagès
16k • written 6.2 years ago by
kgorczak
▴ 10
0
votes
4
replies
1.3k
views
Query with Biostrings pairwise alignment output positon
biostrings
alignment
pairwisealignment
updated 6.3 years ago by
Hervé Pagès
16k • written 6.3 years ago by
dhwani2410
• 0
1
vote
2
replies
3.4k
views
Calculate the number of SNP differences between sequences in multiple alignment
pairwisealignment
SNP
dnasequence
7.1 years ago
lordbleys
• 0
0
votes
0
replies
969
views
Translate to aminoacid, align pairwise and un-translate back to DNA
translation
pairwisealignment
7.6 years ago
igferres
• 0
0
votes
1
reply
845
views
Mapping sequence features to alignments
pairwisealignment
indel
updated 7.7 years ago by
Hervé Pagès
16k • written 7.7 years ago by
oliwindram
▴ 10
3
votes
2
replies
1.3k
views
pairwiseAlignments coordinate mapping?
biostrings
pairwisealignment
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
Steve Lianoglou
★ 13k
2
votes
1
reply
1.0k
views
Error in score() function on pairwiseAlignment()
biostrings
pairwisealignment
updated 7.9 years ago by
shepherl
3.8k • written 7.9 years ago by
jdydu
• 0
0
votes
1
reply
1.2k
views
pairwiseAlignment() - Similarity NA% ?
biostrings
pairwisealignment
updated 8.5 years ago by
Hervé Pagès
16k • written 8.5 years ago by
boris.steipe
• 0
2
votes
3
replies
1.1k
views
indels located at the edges of subject and Biostrings pairwiseAlignment function
pairwisealignment
biostrings
8.5 years ago
vincent.plagnol
▴ 10
0
votes
2
replies
1.6k
views
inconsistent pairwiseAlignment behaviour (Biostrings) with multiple alignments with identical scores
biostrings
pairwisealignment
8.5 years ago
vincent.plagnol
▴ 10
4
votes
5
replies
2.5k
views
global alignment in Biostrings , Memory fails when seq. lengths around 50K bp
Biostrings
pairwiseAlignment
updated 9.4 years ago by
Hervé Pagès
16k • written 9.4 years ago by
branislav misovic
▴ 120
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Michael Love
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Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
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Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
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It's pretty easy to do a two-group comparison using edgeR, but you seem to be stuck at the initial stage of reading data into R. If you exp…
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The reason why the two plots are different is that the first plot is a PCA plot while the second is a biplot. Quite different plots. The P…
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Votes
transcript name mapping between human and mouse
transcript name mapping between human and mouse
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Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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