Showing : pamr • reset
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ComBat covariate bias when building centroid based predictors
combat combat sva pamr limma design matrix sva
5.6 years ago jmsendoya • 0
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pamr
pamr pamr
updated 11.4 years ago by 65k • written 11.4 years ago by ▴ 10
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1.2k
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pam implementation
pamr pamr
updated 11.5 years ago by ▴ 280 • written 11.5 years ago by ★ 13k
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1.4k
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a bug in the function pamr.plotcen()
pamr pamr
updated 12.9 years ago by 25k • written 12.9 years ago by ▴ 90
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1.8k
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Error in pamr.predict
pamr pamr
updated 15.0 years ago by 16k • written 15.0 years ago by ▴ 10
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problem regarding runtime of pamr.cv
pamr pamr
updated 15.2 years ago by 65k • written 15.2 years ago by ▴ 170
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question about pamr.listgenes ....
pamr pamr
15.7 years ago ALok ▴ 170
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pamr.cv function
Cancer pamr Cancer pamr
16.2 years ago Patricia Greninger ▴ 10
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1.2k
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problem with pamr.listgenes in pamr package
pamr pamr
updated 17.0 years ago by ▴ 250 • written 17.0 years ago by ▴ 10
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1.4k
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Error of pamr.knnimpute
Microarray pamr Microarray pamr
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 10
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841
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magnifying genenames in pamr.plotcen()
pamr pamr
updated 18.1 years ago by 65k • written 18.1 years ago by ▴ 830
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pamr package - problem with pamr.cv() function
pamr pamr
18.1 years ago Vincent Negre ▴ 30
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How to write a text file of a pamr.confusion table ?
pamr pamr
updated 18.4 years ago by ▴ 250 • written 18.4 years ago by ▴ 540
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pamr and samr problems with windowsXP - pop-up windows
pamr pamr
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 540
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pamr, samr and RWinEdt conficts - New editor req info
pamr pamr
updated 18.6 years ago by ★ 7.4k • written 18.6 years ago by ▴ 540
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Re: Re: segmentation error in pamr.knnimpute
pamr impute pamr impute
19.0 years ago Alice Le Bars ▴ 40
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821
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segmentation error in pamr.knnimpute
pamr pamr
updated 19.0 years ago by ★ 7.4k • written 19.0 years ago by ▴ 40
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pamr / R graphics recording
pamr pamr
updated 19.3 years ago by ▴ 40 • written 19.3 years ago by ▴ 130
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1.7k
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Installation Problem on OS X
GO geneplotter graph Rgraphviz pamr globaltest GO geneplotter graph Rgraphviz pamr
updated 19.4 years ago by ▴ 680 • written 19.4 years ago by ▴ 10
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Application of PAMR from Affy to spot data
affy pamr affy pamr
updated 19.6 years ago by ★ 5.5k • written 19.6 years ago by ▴ 180
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pamr Error: each class must have >1 sample
GO pamr GO pamr
updated 19.8 years ago by ▴ 630 • written 19.8 years ago by ★ 1.4k
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pamr and sample.subset option
pamr pamr
19.8 years ago Dr Gyorffy Balazs ▴ 320
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Hierarchical clustering and shrinking centroids...
Classification Clustering pamr Classification Clustering pamr
updated 19.9 years ago by ★ 1.0k • written 19.9 years ago by ▴ 180
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Problem with PAM using R 1.9.0
pamr pamr
19.9 years ago Michelle Kittleson ▴ 10
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1.4k
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Bioconductor 1.4 released
Proteomics Annotation Normalization GO Cancer CGH pamr gcrma gpls affyPLM webbioc bim
updated 19.9 years ago by ★ 13k • written 19.9 years ago by ▴ 810
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Bug with R 1.9.0 beta (3/23) and PAMR?
pamr pamr
updated 20.1 years ago by ▴ 360 • written 20.1 years ago by ▴ 180
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wee query on pamr.knnimpute
pamr pamr
20.2 years ago Aedin Culhane ▴ 310
27 results • Page 1 of 1
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
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