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parallel
•
reset
6
votes
12
replies
2.3k
views
mclapply to loop over a GRangesList object
GenomicRanges
GRanges
GRangesList
parallel
mclapply
6.0 years ago
foehn
▴ 100
2
votes
4
replies
1.6k
views
Running HTSFilter in paralell
htsfilter
parallel
updated 9.1 years ago by
andrea.rau
▴ 80 • written 9.1 years ago by
Richard Yanicky
▴ 10
1
vote
5
replies
2.9k
views
DiffBind does not run in parallel
diffbind
parallel
biocparallel
updated 7.1 years ago by
Rory Stark
★ 5.2k • written 7.1 years ago by
eggrandio
• 0
0
votes
4
replies
2.1k
views
DESeq2 using many cores despite parallel = FALSE
deseq2
parallel
updated 5.3 years ago by
Michael Love
43k • written 5.3 years ago by
symbiologist
• 0
1
vote
6
replies
1.9k
views
Multithreading problems with qalign
quasr
parallel
updated 8.2 years ago by
Hotz, Hans-Rudolf
▴ 400 • written 8.2 years ago by
kirt.onthank
• 0
7
votes
4
replies
2.0k
views
How does BiocParallel export variables to threads?
BiocParallel
SnowParam
parallel
updated 4.6 years ago by
Martin Morgan
25k • written 4.6 years ago by
gabriel.hoffman
▴ 170
1
vote
1
reply
1.8k
views
DiffBind error with background=TRUE in dba.normalize?
BiocParallel
DiffBind
parallel
updated 4.1 years ago by
Rory Stark
★ 5.2k • written 4.1 years ago by
Victor
• 0
0
votes
1
reply
1.3k
views
Running limma in parallel
parallel
R
limma
EWAS
updated 3.0 years ago by
Gordon Smyth
52k • written 3.0 years ago by
Lorenzo
• 0
3
votes
4
replies
1.8k
views
DiffBind (Error in if (DBA$config$parallelPackage))
parallel
R
DiffBind
updated 3.2 years ago by
Rory Stark
★ 5.2k • written 3.5 years ago by
eggrandio
• 0
2
votes
10
replies
2.4k
views
Correct way to load a package inside bplapply function
parallel
biocparallel
7.5 years ago
felix.ernst
• 0
4
votes
1
reply
1.5k
views
Parallel Join Excessively Slow
biocparallel
curatedmetagenomicdata
parallel
dplyr
updated 8.2 years ago by
Martin Morgan
25k • written 8.2 years ago by
Lucas Schiffer
▴ 240
1
vote
1
reply
1.7k
views
sva: Parallel execution of sva()-function fails.
sva
parallel
updated 8.0 years ago by
Martin Morgan
25k • written 8.0 years ago by
maltethodberg
▴ 180
1
vote
1
reply
1.2k
views
trigger package fails at parallalization - Transcriptional Regulatory Inference from Genetics of ExpRession
trigger
parallel
processing
multicore
updated 10.3 years ago by
Valerie Obenchain
★ 6.8k • written 10.3 years ago by
affennacken
• 0
3
votes
3
replies
1.8k
views
BiocParallel: zombie processes on FORK cluster
biocparallel
parallel
updated 7.1 years ago by
Martin Morgan
25k • written 7.1 years ago by
alserg
▴ 280
0
votes
1
reply
1.2k
views
DiffBind count warning
diffbind
parallel
updated 7.0 years ago by
Rory Stark
★ 5.2k • written 7.0 years ago by
ghosos
• 0
0
votes
1
reply
1.4k
views
BiocParallel and variable scope in child processes
parallel
variable scope
fork
BiocParallel
updated 8.3 years ago by
Martin Morgan
25k • written 8.3 years ago by
dan.gatti
• 0
0
votes
0
replies
819
views
set.seed in function vs clusterSetRNGStream: switching from one to another
parallel
seed
2.6 years ago
ZheFrench
▴ 60
0
votes
1
reply
1.5k
views
News:
Course Announcement: Use R / Bioconductor for Sequence Analysis (Intermediate Course)
Course
RNA-Seq
Chip-seq
Parallel
News
9.9 years ago
Martin Morgan
25k
0
votes
1
reply
1.3k
views
Paralelization of maSigPro
maSigPro
parallel
9.4 years ago
gmdc
• 0
0
votes
3
replies
1.9k
views
DEXSeqHTML parallelization error
Parallel
DEXSeq
DEXSeqHTML
9.2 years ago
Neel Aluru
▴ 460
0
votes
4
replies
1.6k
views
Using iterators and foreach with doMC, using DNAStringSets
dnastringset
parallel
iterators
9.2 years ago
ben.ward
▴ 30
0
votes
9
replies
2.6k
views
problem using >3 clusters with Quasr
quasr
parallel
updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
rna seq
▴ 90
0
votes
1
reply
1.4k
views
error when genomeFile too big when running Quasr on >3 clusters
quasr
parallel
cluster
9.0 years ago
rna seq
▴ 90
2
votes
3
replies
3.1k
views
BiocParallel::bplapply() performance with MulticoreParam() is worse than mclapply()
biocparallel
parallel
7.7 years ago
davide risso
▴ 980
1
vote
0
replies
1.7k
views
Problems running oligo functions in parallel on a linux computer
biocparallel
oligo
rma
linux
parallel
7.1 years ago
s.munster
▴ 40
0
votes
0
replies
1.4k
views
miR2Pathway Finite Observations
pathway analysis
mirna
parallel
6.9 years ago
genomic8328
▴ 10
0
votes
1
reply
690
views
Using multiple cores SCTensor package
SCTensor
Single Cell RNA Seq
Parallel
5.2 years ago
ieuangw
• 0
27 results • Page
1 of 1
Recent ...
Replies
Comment: Why the order of sample names in the beta matrix affect the analysis results of
by
81becky
• 0
It sounds like you're experiencing a common issue with data alignment in Champ.DMP. Ensure that your beta matrix and PD files are consisten…
Comment: accounting for vs. removing batch effects with DESeq2 in RNAseq analysis
by
Blair
• 0
@[Sprunki][1] wrote: Please read the vignette and think about adhering to the author's best practice, which discusses batch impacts. [1…
Comment: error in ChAMP loading file
by
81becky
• 0
hi Giulia, it sounds like you're facing a frustating issue with your chAMP import. One common suggestion is to double-check your CSV fomat…
Answer: DESeq2 adujsted p-value cutoff seemingly not working
by
James W. MacDonald
68k
From `?results' ``` On p-values: By default, independent filtering is performed to select a set of genes for multiple tes…
Comment: Issue with assigning transcript IDs to reads when using summarizeOverlaps(mode =
by
SofieK
• 0
Thank you, I will try this and see.
Votes
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
A: Effect of lfcThreshold on p-value in DESeq2
Answer: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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