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pasilla
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Unable to reproduce Pasilla dataset which fresh instalation
tutorial
DESeq2
pasilla
3.2 years ago
Carina
• 0
1
vote
5
replies
1.4k
views
DESeq2: differential expression analysis from matrix count with gene annotation
deseq2
dataframe
pasilla
updated 5.0 years ago by
Michael Love
41k • written 5.0 years ago by
ecg1g15
▴ 20
1
vote
2
replies
2.1k
views
I can't install the pasilla package
pasilla
biocmanager
updated 5.4 years ago by
James W. MacDonald
65k • written 5.4 years ago by
Aurora
▴ 20
1
vote
2
replies
1.2k
views
trouble importing data for DEseq2 workflow
deseq2
tximport
tximportdata
pasilla
Tutorial
updated 5.5 years ago by
Michael Love
41k • written 5.5 years ago by
Stanley Yang
• 0
2
votes
2
replies
2.9k
views
DESeq2: resultsNames(dds): intercept
deseq2
pasilla
updated 6.7 years ago by
rrcutler
▴ 70 • written 6.7 years ago by
waquinon
• 0
0
votes
3
replies
2.4k
views
Difference between DESeq2 package version 1.16.1 and 1.14.1
deseq2
pasilla
updated 6.9 years ago by
Michael Love
41k • written 6.9 years ago by
jingjiaok
• 0
1
vote
2
replies
2.8k
views
DESeq - Change PCA axis from PasillaGuide to PC3 and PC4
deseq
pca
pasilla
updated 8.1 years ago by
Federico Marini
▴ 150 • written 8.1 years ago by
chqr
• 0
7 results • Page
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Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Comment: Single-Cell Data Simulation from Bulk RNA-seq
by
wichaidi
• 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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