Bioconductor Pathway

Showing : pathway • reset

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1.2k

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pathway ORA limma CAMERA DGE

updated 21 months ago by Gordon Smyth 52k • written 21 months ago by manuelsokolov • 0

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1.2k

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pathway SBGNview Reactome pathview PANTHER

written 4.1 years ago by Luo Weijun ★ 1.6k

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1.3k

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pathway KEGGREST GSEA

updated 4.1 years ago by Kevin Blighe ★ 4.0k • written 4.1 years ago by MOHAMMAD • 0

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1.5k

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pathway KEGG annotation annotationhub

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by Bogdan ▴ 670

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6.9k

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R ClusterProfiler Enrichment Pathway

updated 23 months ago by Guido Hooiveld ★ 4.1k • written 5.1 years ago by t.b.kuipers • 0

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2.6k

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pathview kegg r pathway

5.5 years ago • updated 5.4 years ago AZ ▴ 30

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1.3k

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limma pathway

updated 5.7 years ago by mikhael.manurung ▴ 280 • written 5.7 years ago by Dario Strbenac ★ 1.6k

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1.0k

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kegg pathway pathview

6.2 years ago Ahdee ▴ 60

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1.0k

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IHW deseq2 Pathway

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by guidobarzaghi ▴ 20

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1.9k

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deseq2 pathway ihw

updated 6.2 years ago by Michael Love 43k • written 6.2 years ago by guidobarzaghi ▴ 20

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1.2k

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igraph miR2Pathway Pathway page_rank

updated 7.1 years ago by Martin Morgan 25k • written 7.1 years ago by genomic8328 ▴ 10

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5.6k

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pathview KEGGgraph gage pathway pathway analysis

7.8 years ago Luo Weijun ★ 1.6k

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1.7k

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pathway paxtools

10.6 years ago Guido Leoni ▴ 200

13 results • Page 1 of 1

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Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

I used this argument in the second paragraph of code forthe heatmap, this is wehre I got the message Error in `[.default`(annotation_col, c…

Answer: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

Ah, yes. The non-ASCII character error. My favorite! Please note that `pheatmap` is not a Bioconductor package, so you should be asking …

Comment: Heatmap of a transformed deseq object with pheatmap by caroline.zanchi • 0

It is in ! It just took longer than planned :) ... aaaand now that I added the heatmap in I realize lits of genes really do not look like t…

Comment: Heatmap of a transformed deseq object with pheatmap by James W. MacDonald 68k

You neglected to add the code you use to generate the heatmap.

Answer: Error in readCodelinkSet function by James W. MacDonald 68k

Please don't cross-post to Biostars. Either post here or there, but not both.

Votes

Comment: How to load scRNA-seq data from GEO

limma correction for tumor purity

Answer: limma correction for tumor purity

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Popular Question to gabriella.jacobson-eisenberg ▴ 20

Popular Question to nazaninhoseinkhan • 0