Biostar Pathway

Showing : pathway • reset

votes

497

views

pathway SBGNview Reactome pathview PANTHER

written 22 months ago by Luo Weijun ★ 1.6k

votes

487

views

pathway KEGGREST GSEA

updated 23 months ago by Kevin Blighe 3.7k • written 23 months ago by MOHAMMAD • 0

votes

replies

590

views

pathway KEGG annotation annotationhub

updated 2.7 years ago by James W. MacDonald 62k • written 2.7 years ago by Bogdan ▴ 660

votes

2.2k

views

R ClusterProfiler Enrichment Pathway

updated 2.8 years ago by Kevin Blighe 3.7k • written 2.8 years ago by t.b.kuipers • 0

votes

replies

820

views

pathview kegg r pathway

3.2 years ago AZ ▴ 30

votes

replies

623

views

limma pathway

updated 3.5 years ago by mikhael.manurung ▴ 270 • written 3.5 years ago by Dario Strbenac ★ 1.5k

votes

replies

491

views

kegg pathway pathview

3.9 years ago Ahdee ▴ 50

votes

replies

445

views

IHW deseq2 Pathway

updated 3.9 years ago by Michael Love 39k • written 3.9 years ago by guidobarzaghi ▴ 20

votes

replies

1.0k

views

deseq2 pathway ihw

updated 4.0 years ago by Michael Love 39k • written 4.0 years ago by guidobarzaghi ▴ 20

votes

579

views

igraph miR2Pathway Pathway page_rank

updated 4.8 years ago by Martin Morgan 25k • written 4.9 years ago by genomic8328 ▴ 10

votes

replies

3.2k

views

pathview KEGGgraph gage pathway pathway analysis

5.6 years ago • updated 5.5 years ago Luo Weijun ★ 1.6k

votes

replies

1.2k

views

pathway paxtools

8.3 years ago Guido Leoni ▴ 200

12 results • Page 1 of 1

Recent ...

Replies

Comment: DESeq2 and heatmap for multiple comparisons by artem.vorobyev • 0

this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…

Comment: athPkgBuilder data source :missing probesets by nicklesteele532 • 0

> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …

Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Poonam • 0

> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…

Comment: Why in Bioconductor community people rarely upvote questions? by Hervé Pagès 16k

BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …

Answer: DESeq2 and heatmap for multiple comparisons by swbarnes2 ★ 1.2k

If you want to know what genes are different between lesion and treated, compare them to each other.

Votes

Comment: recount 3 protect read length metadata

Answer: Doubts about manipulation and annotation of microarray files deposited at GEO

C: Batch correction in DESeq2

Comment: Strand information in a GAlignmentsList object derived from strand-specific pair

Awards • All