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pathway
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News:
SBGNview manuscript on bioRxiv now
pathway
SBGNview
Reactome
pathview
PANTHER
updated 9 days ago by
Chu
• 0 • written 9 days ago by
Luo Weijun
★ 1.5k
2
votes
1
reply
95
views
GSEA generate genesets
pathway
KEGGREST
GSEA
updated 20 days ago by
Kevin Blighe
2.7k • written 21 days ago by
MOHAMMAD
• 0
0
votes
3
replies
122
views
extracting the genes associated with a specific pathway
pathway
KEGG
annotation
annotationhub
updated 10 months ago by
James W. MacDonald
56k • written 10 months ago by
Bogdan
▴ 610
2
votes
1
reply
221
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 11 months ago by
Kevin Blighe
2.7k • written 11 months ago by
t.b.kuipers
• 0
4
votes
4
replies
290
views
How I interpret this plot from pathview
pathview
kegg
r
pathway
17 months ago • updated 16 months ago
Fereshteh
▴ 20
2
votes
3
replies
194
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma
pathway
updated 19 months ago by
mikhael.manurung
▴ 230 • written 19 months ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
193
views
Help with mapping Kegg hsa01100 using pathview
kegg
pathway
pathview
2.1 years ago
Ahdee
▴ 50
0
votes
2
replies
190
views
Adjusting DESeq2 p-values through IHW using pathway information as covariate
IHW
deseq2
Pathway
updated 2.1 years ago by
Michael Love
32k • written 2.1 years ago by
guidobarzaghi
▴ 20
5
votes
6
replies
638
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2
pathway
ihw
updated 2.1 years ago by
Michael Love
32k • written 2.2 years ago by
guidobarzaghi
▴ 20
0
votes
1
reply
315
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 3.0 years ago by
Martin Morgan
25k • written 3.0 years ago by
genomic8328
▴ 10
2
votes
11
replies
2.0k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
3.7 years ago
Luo Weijun
★ 1.5k
2
votes
2
replies
835
views
paxtoolsr how to extract Modificationfeature related to a node
pathway
paxtools
6.5 years ago
Guido Leoni
▴ 200
12 results • Page
1 of 1
Recent ...
Replies
Answer: Differential Transcript Usage: complex factorial design
by
Gordon Smyth
42k
edgeR does differential expression for transcripts via the catchSalmon function followed the usual edgeR pipelines as you would do for gene…
Comment: RSamtools idxstatsBam not working with remote bam file
by
mja18
▴ 30
Thanks Martin. Yes, that works.
Answer: RSamtools idxstatsBam not working with remote bam file
by
Martin Morgan
25k
Can you tell me if the following works for you? In a new R session ```{r} library(Rsamtools) setMethod(idxstatsBam, "BamFile", …
Comment: Aspli: error with gbCounts
by
achernomoretz
• 0
Hi Jeremy. We got it and we are working on the issue. Thanks for your patience. A
Comment: Aspli: error with gbCounts
by
jbono
• 0
Sorry, I forgot to respond here that I sent the file via email. Please let me know if you didn't receive it, thanks!
Votes
Answer: RSamtools idxstatsBam not working with remote bam file
Running > 100 samples per group - memory issues
R failing to load genome files from EnsDb.Hsapiens.v86
Comment: TCGA data analysis
Comment: BSGenome Forge for non-model organism
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