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Showing :
pathway
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News:
SBGNview manuscript on bioRxiv now
pathway
SBGNview
Reactome
pathview
PANTHER
written 22 months ago by
Luo Weijun
★ 1.6k
2
votes
1
reply
487
views
GSEA generate genesets
pathway
KEGGREST
GSEA
updated 23 months ago by
Kevin Blighe
3.7k • written 23 months ago by
MOHAMMAD
• 0
0
votes
3
replies
590
views
extracting the genes associated with a specific pathway
pathway
KEGG
annotation
annotationhub
updated 2.7 years ago by
James W. MacDonald
62k • written 2.7 years ago by
Bogdan
▴ 660
3
votes
1
reply
2.2k
views
Genelist input for ClusterProfiler
R
ClusterProfiler
Enrichment
Pathway
updated 2.8 years ago by
Kevin Blighe
3.7k • written 2.8 years ago by
t.b.kuipers
• 0
4
votes
4
replies
820
views
How I interpret this plot from pathview
pathview
kegg
r
pathway
3.2 years ago
AZ
▴ 30
2
votes
3
replies
623
views
Accounting for Gene Set Overlaps in Goana and Kegga Results
limma
pathway
updated 3.5 years ago by
mikhael.manurung
▴ 270 • written 3.5 years ago by
Dario Strbenac
★ 1.5k
0
votes
0
replies
491
views
Help with mapping Kegg hsa01100 using pathview
kegg
pathway
pathview
3.9 years ago
Ahdee
▴ 50
0
votes
2
replies
445
views
Adjusting DESeq2 p-values through IHW using pathway information as covariate
IHW
deseq2
Pathway
updated 3.9 years ago by
Michael Love
39k • written 3.9 years ago by
guidobarzaghi
▴ 20
5
votes
6
replies
1.0k
views
DESeq2 w. pathway/network info as a prior knowledge
deseq2
pathway
ihw
updated 4.0 years ago by
Michael Love
39k • written 4.0 years ago by
guidobarzaghi
▴ 20
0
votes
1
reply
579
views
igraph page_rank miR2Pathway: Top ranked list, printing out pathway names
igraph
miR2Pathway
Pathway
page_rank
updated 4.8 years ago by
Martin Morgan
25k • written 4.9 years ago by
genomic8328
▴ 10
2
votes
11
replies
3.2k
views
Recent build and parsing error in pathview
pathview
KEGGgraph
gage
pathway
pathway analysis
5.6 years ago • updated 5.5 years ago
Luo Weijun
★ 1.6k
2
votes
2
replies
1.2k
views
paxtoolsr how to extract Modificationfeature related to a node
pathway
paxtools
8.3 years ago
Guido Leoni
▴ 200
12 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 and heatmap for multiple comparisons
by
artem.vorobyev
• 0
this I already did. My question is how to visualize differentially expressed genes on the heatmap for all 3 groups (healty->lesion->treat…
Comment: athPkgBuilder data source :missing probesets
by
nicklesteele532
• 0
> >>> > >>> How to handle the one probeset to multiple locus mappings? I can > >think 3 > >>> possible solutions: > >>> 1. pick the "best" …
Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package)
by
Poonam
• 0
> sum(width(gr_toexclude)) [1] 2713499861 I excluded everything which was not locus. If small rna locus is from 2000 to 4000 and next locu…
Comment: Why in Bioconductor community people rarely upvote questions?
by
Hervé Pagès
16k
BTW I fail to see how the lack of upvotes to a question would be discouraging as long as you get a good answer. OTOH I can see how failing …
Answer: DESeq2 and heatmap for multiple comparisons
by
swbarnes2
★ 1.2k
If you want to know what genes are different between lesion and treated, compare them to each other.
Votes
Comment: recount 3 protect read length metadata
Answer: Doubts about manipulation and annotation of microarray files deposited at GEO
C: Batch correction in DESeq2
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
Comment: Strand information in a GAlignmentsList object derived from strand-specific pair
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Chris
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Malcolm Cook
★ 1.6k
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Hervé Pagès
16k
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Hans-Ulrich Klein
▴ 330
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JoeMG
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