Bioconductor Pathway

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388

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pathway ORA limma CAMERA DGE

updated 3 months ago by Gordon Smyth 49k • written 3 months ago by manuelsokolov • 0

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782

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pathway SBGNview Reactome pathview PANTHER

written 2.7 years ago by Luo Weijun ★ 1.6k

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824

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pathway KEGGREST GSEA

updated 2.7 years ago by Kevin Blighe 3.9k • written 2.7 years ago by MOHAMMAD • 0

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916

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pathway KEGG annotation annotationhub

updated 3.5 years ago by James W. MacDonald 64k • written 3.5 years ago by Bogdan ▴ 670

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3.9k

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R ClusterProfiler Enrichment Pathway

updated 5 months ago by Guido Hooiveld ★ 3.8k • written 3.6 years ago by t.b.kuipers • 0

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1.4k

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pathview kegg r pathway

4.1 years ago • updated 4.0 years ago AZ ▴ 30

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911

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limma pathway

updated 4.3 years ago by mikhael.manurung ▴ 270 • written 4.3 years ago by Dario Strbenac ★ 1.5k

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693

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kegg pathway pathview

4.7 years ago Ahdee ▴ 50

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632

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IHW deseq2 Pathway

updated 4.8 years ago by Michael Love 41k • written 4.8 years ago by guidobarzaghi ▴ 20

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1.3k

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deseq2 pathway ihw

updated 4.8 years ago by Michael Love 41k • written 4.8 years ago by guidobarzaghi ▴ 20

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790

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igraph miR2Pathway Pathway page_rank

updated 5.7 years ago by Martin Morgan 25k • written 5.7 years ago by genomic8328 ▴ 10

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4.1k

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pathview KEGGgraph gage pathway pathway analysis

6.4 years ago Luo Weijun ★ 1.6k

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1.3k

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pathway paxtools

9.1 years ago Guido Leoni ▴ 200

13 results • Page 1 of 1

Recent ...

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Comment: How to use bootRanges to bootstrap small RNA loci (nullranges package) by Michael Love 41k

Looks good then.

Answer: DESeq2 : stat or lfcshrink for GSEA analysis by Michael Love 41k

There have been many threads on this support site on this topic.

Answer: Filter genes by expression for voomLmFit by James W. MacDonald 64k

`voomLmFit` is meant to be able to correctly specify the degrees of freedom when you have lots of zeros (as well as iterating if you use `d…

Comment: How to get DMR for Infinium methylation EPIC v2 by James W. MacDonald 64k

You want to make sure that you already have a `GenomicRatioSet` that you pass into `cpg.annotate`. ``` eset <- preprocessFunnorm(dat) myAn…

Comment: SingleR annotation of several slots/patients by Bine ▴ 20

Ah, I just found the function JoinLayers.. I think this should help...

Votes

Answer: SingleR annotation of several slots/patients

Answer: List of Deprecated Packages for Bioc3.18

Attempting to import SBML file using R

Answer: RNASeq time course analysis, missing time points for control

Answer: biomaRt not working - lazy table error

Awards • All

Popular Question to Henrik Bengtsson ★ 2.4k

Popular Question to paul.johnston ▴ 10

Teacher to Mike Smith ★ 6.2k