Bioconductor Pathwaypca

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pathwayPCA

updated 17 months ago by Kevin Blighe ★ 3.9k • written 17 months ago by Alena • 0

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pathwayPCA Gsea

updated 17 months ago by gabriel.odom • 0 • written 17 months ago by Mikołaj Mierzejewski • 0

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Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Usually I run `voomLmFit`, although in order to create the mean-variance trend plots for this particular post, I ran `voom`; I've checked -…

Comment: Error in champ.load(): The following specified files do not exist by Sherin • 0

it worked! thank you so much!!

Comment: Multi factor design edgeR/Deseq2 by Elizabeth • 0

Sorry I realise this thread is ancient, but I'm wondering why it's ok to remove the last column from the design matrix? Also, why this desi…

Comment: DESeq2 setting significant p-value by Michael Love 41k

It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.

Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

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