Bioconductor Pathwaypca

Showing : pathwaypca • reset

2

votes

3

replies

890

views

pathwayPCA Gsea

updated 17 months ago by gabriel.odom • 0 • written 17 months ago by Mikołaj Mierzejewski • 0

0

votes

1

reply

494

views

pathwayPCA

updated 17 months ago by Kevin Blighe ★ 3.9k • written 17 months ago by Alena • 0

2 results • Page 1 of 1

Recent ...

Replies

Comment: what is the sampleFiles by James W. MacDonald 65k

I don't see any sampleFiles argument for any function in that package. Ideally you would at least tell us what function you are using.

Comment: Interaction Terms in DESeq2 - Shrinkage by Michael Love 41k

Yes, apeglm requires relevel and nbinomWaldTest to generate the coefficient estimate and its SE. Alternatively you can use ashr with a con…

Comment: A ComBat-seq issue: the covariates are confounded by schlumbohm • 0

Dear ATpoint, thank you for the comment. I did correct the question. For the group, I did accidentally share the input for all three batch…

Comment: Memory errors using read.bismark? by Peter Hickey ▴ 690

If you process serially (i.e. with `BPPARAM = SerialParam()`) then you might be okay. The final object will be on the order of 250 GB in-me…

Comment: Memory errors using read.bismark? by Juan Higareda • 0

Thanks for the answer. Actually, processing one file and keeping it in memory wasn't the problem, is more processing all the 15 files to bu…

Votes

Comment: [DiffBind] Obtaining normalization factors

Answer: GSVA error

Awards • All