Bioconductor Pca plot

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PCA plot RNAseq

updated 4.2 years ago by Kevin Blighe ★ 3.9k • written 4.2 years ago by rajeshparmar4 ▴ 10

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pca plot pca scree plot pca2go

updated 6.0 years ago by Steve Lianoglou ★ 13k • written 6.0 years ago by suranandbabu85 • 0

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pca pca plot pcagopromoter

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by sherman.leung ▴ 10

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deseq2 pca plot

updated 7.3 years ago by Michael Love 41k • written 7.3 years ago by pkachroo ▴ 10

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DeSeq2 PCA plot

7.3 years ago sarahmacdonald86 • 0

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Comment: Methylation Analysis experiment design using Limma by hortense96 • 0

Thank you very much for your reply and your suggestion, as I'm having a bit of trouble finding information on how to manage this part of th…

Comment: Limma design with continuous and categorical covariates by hortense96 • 0

Hello, I'm trying to do a differential methylation analysis with the Limma package and was wondering if you had any suggestions on how to …

Answer: minfi::read.metharray.exp by Basti ▴ 770

Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…

Comment: DESeq2 - dispersion estimation when there is none by WardDeb • 0

Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …

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Answer: OrgDb for maize

Answer: DESeq2 - dispersion estimation when there is none

Comment: Cannabis and KEGGgraph

Answer: Cannabis and KEGGgraph

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