Biostar Pca

Showing : pca • reset

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162

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RStudio PCA DESeq2

updated 24 days ago by swbarnes2 ★ 1.0k • written 25 days ago by 960942 • 0

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130

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plotMDS PCA RNASeq MDS

updated 8 weeks ago by Gordon Smyth 45k • written 8 weeks ago by Raito92 ▴ 60

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tracy-widom PCA LEA

10 weeks ago Bruna • 0

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288

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RNA-seq PCA control DESeq2 Quality

12 weeks ago • updated 21 days ago 9906201a • 0

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387

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DESeq2 PCA

updated 4 months ago by swbarnes2 ★ 1.0k • written 4 months ago by Jonas • 0

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245

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plotIndiv 3D mixOmics PCA

5 months ago Blobby123 • 0

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312

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DESeq2 ExpressionData heatmaps pca

11 months ago Clara • 0

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627

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EDA pcaExplorer PCAtools PCA

updated 5 months ago by Miguel ▴ 10 • written 21 months ago by k.vitting.seerup ▴ 100

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2.5k

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diffbind pca

updated 9 months ago by Rory Stark ★ 4.4k • written 6.6 years ago by renanec ▴ 20

9 results • Page 1 of 1

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Answer: regression analysis for epic array methylation data using limma by Basti ▴ 280

Which package do you intend to use ? There are many tutorials in packages vignette that show you how to perform differential methylation an…

Comment: scRNASeq reference at a transcript level by Basti ▴ 280

I believe this question is not related to any Bioconductor package, I think the only solution to this question is to search yourself in Pub…

Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2 by andrebolerbarros ▴ 10

Upgrading the package solved the issue, thanks!

Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2 by ATpoint ★ 1.2k

The error comes from the `mixsqp` package, see https://github.com/stephens999/ashr/issues/131. Upgrading the package to the most recent 0.3…

Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2 by andrebolerbarros ▴ 10

Thanks for the suggestion. I ran the following filtering criteria: ``` keep <- rowSums(counts(dds) >= 10) >= 5 dds <- dds[keep,] ``` It ga…

Votes

Answer: Warnings when using "ashr" in lfcshrinkage for DESeq2

Answer: UniprotKB AC/ID to Entrez ID Conversion

edgeR: what to do with no replicates

Differential gene expression anlaysis?

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