Bioconductor PcaExplorer

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pca2go pcaexplorer

updated 7.7 years ago by Federico Marini ▴ 180 • written 7.7 years ago by reubenmcgregor88 • 0

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DESeq2 RNASeq PrincipalComponent pcaExplorer

written 2.4 years ago by James • 0

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DESeq2 pcaExplorer

updated 4.1 years ago by Michael Love 43k • written 4.1 years ago by vanbelj ▴ 30

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annotation go pcaExplorer AnnotationForge

updated 6.1 years ago by James W. MacDonald 68k • written 6.2 years ago by psutton • 0

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EDA pcaExplorer PCAtools PCA

updated 3.4 years ago by Miguel ▴ 20 • written 4.7 years ago by k.vitting.seerup ▴ 120

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PCAtools pcaExplorer pcaMethods

updated 2.8 years ago by Federico Marini ▴ 180 • written 2.8 years ago by m610110001 • 0

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GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 3.2 years ago by Federico Marini ▴ 180 • written 3.2 years ago by chase.mateusiak • 0

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3.8k

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PCAtools edgeR pcaExplorer RNASeq RNAseq123

3.0 years ago Alan • 0

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pcaExplorer pca

updated 8.4 years ago by Federico Marini ▴ 180 • written 8.5 years ago by swaegers.janne • 0

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DESeq2 pcaExplorer

updated 10 months ago by BioinfGuru ▴ 70 • written 11 months ago by Eric Katagirya • 0

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deseq2 pcaexplorer

7.7 years ago reubenmcgregor88 • 0

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pcaexplorer genespca deseq2

updated 7.5 years ago by Michael Love 43k • written 7.5 years ago by sally_b86 • 0

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Comment: Bioconductor 3.20 Release Schedule by randyprice13102000 • 0

This offers much info https://bioconductor.org/checkResults/release/bioc-LATEST/

Comment: Filtering after DESeq by ATpoint ★ 4.8k

The problem is that your prefilter is not group-aware so the behaviour of seeing these sorts of outliers is expected. This is why I always …

Comment: GSEA preranked analysis downstream of DEseq2 by ATpoint ★ 4.8k

All due respect, this is what people do since pvalues exist, so this paper is not a reference, not is this a special score that merits a na…

Comment: Check removeBatchEffect effectiveness by ATpoint ★ 4.8k

> insert size, mean GC, etc... This is not a classical "batch" in the common sense, at least I've never seen this to be corrected for expl…

Answer: Check removeBatchEffect effectiveness by Gordon Smyth 52k

Your call to removeBatchEffect() is not correct because that function does not have an argument called `batch3`, meaning that the batch fac…

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Answer: DiffBind; Error: No sites have activity greater than filter value

DiffBind; Error: No sites have activity greater than filter value

remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline

How to remove X & Y chromosome genes from RNAseq data

Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?

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Popular Question to Dario Strbenac ★ 1.6k