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Showing :
pcaExplorer
•
reset
0
votes
3
replies
698
views
Higher Dimensional RNASeq Clustering Significance
DESeq2
RNASeq
PrincipalComponent
pcaExplorer
written 16 months ago by
James
• 0
0
votes
3
replies
1.1k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 21 months ago by
Federico Marini
▴ 150 • written 21 months ago by
m610110001
• 0
5
votes
6
replies
2.3k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
23 months ago
Alan
• 0
4
votes
7
replies
1.8k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic
org.Sc.sgd.db
pcaExplorer
topGO
EnrichmentBrowser
updated 2.1 years ago by
Federico Marini
▴ 150 • written 2.1 years ago by
chase.mateusiak
• 0
9
votes
6
replies
27k
views
DESeq2 / PCA Analysis of RNA-seq Data - Best Explanatory Resource?
DESeq2
pcaExplorer
updated 3.0 years ago by
Michael Love
41k • written 3.1 years ago by
vanbelj
▴ 20
2
votes
4
replies
1.5k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 2.3 years ago by
Miguel
▴ 10 • written 3.6 years ago by
k.vitting.seerup
▴ 120
0
votes
7
replies
1.7k
views
go_bp table in custom OrgDb package
annotation
go
pcaExplorer
AnnotationForge
updated 5.1 years ago by
James W. MacDonald
65k • written 5.1 years ago by
psutton
• 0
0
votes
1
reply
1.1k
views
PCA on deseq2 gene data set
pcaexplorer
genespca
deseq2
updated 6.4 years ago by
Michael Love
41k • written 6.4 years ago by
sally_b86
• 0
0
votes
8
replies
2.1k
views
pcaEcplorer PCA2go function crashing
pca2go
pcaexplorer
updated 6.6 years ago by
Federico Marini
▴ 150 • written 6.6 years ago by
reubenmcgregor88
• 0
1
vote
2
replies
1.3k
views
Error in pcaplot3d from pcaExplorer, when running Deseq2 since update of packages
deseq2
pcaexplorer
6.6 years ago
reubenmcgregor88
• 0
1
vote
2
replies
1.5k
views
pcaExplorer error displaying PCA plot
pcaExplorer
pca
updated 7.4 years ago by
Federico Marini
▴ 150 • written 7.4 years ago by
swaegers.janne
• 0
11 results • Page
1 of 1
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Replies
Comment: error when using M-values in ChAMP
by
hortenseguillaume96
• 0
Hello Tian, I'd like to get the M-values matrix so that I can carry out a linear regression study. However, when I apply the champ.load fu…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
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