Bioconductor PcaMethods

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pcaMethods pca

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by yousavdj • 0

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pcaMethods

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PCAtools pcaExplorer pcaMethods

updated 22 months ago by Federico Marini ▴ 150 • written 22 months ago by m610110001 • 0

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OutlierD pcaMethods MicroarrayData Microarray

3.0 years ago waiyin0923 • 0

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pcaMethods

3.0 years ago Gero • 0

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pcaMethods

3.3 years ago k.vitting.seerup ▴ 120

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pcamethods

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by johnnytam100 • 0

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pcamethods missing data

7.1 years ago eli-sava • 0

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pcamethods

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by allantanaka11 • 0

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metaboliteData pcaMethods pcamethods r package metabolite Data

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by lukasz.galecki ▴ 10

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pcamethods r

8.0 years ago stolarek.ir • 0

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pcaMethods pcaMethods

10.2 years ago • updated 10.1 years ago Julian Gehring ★ 1.3k

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pcaMethods pcaMethods

10.2 years ago Guest User ★ 13k

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pcaMethods pcaMethods

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pcaMethods pcaMethods

13.2 years ago Manca Marco PATH ▴ 340

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Clustering pcaMethods Clustering pcaMethods

13.9 years ago avinash gupta ▴ 130

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pcaMethods pcaMethods

updated 15.4 years ago by Wolfgang Huber ★ 13k • written 15.4 years ago by Yury Bukhman ▴ 20

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aroma.light pcaMethods aroma.light pcaMethods

updated 15.6 years ago by Sean Davis 21k • written 15.6 years ago by Tillinghast, Guy, M.D. ▴ 30

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impute pcaMethods impute pcaMethods

16.5 years ago De-Jian ZHAO ▴ 240

19 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

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Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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