Bioconductor PcaMethods

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OutlierD pcaMethods MicroarrayData Microarray

3.0 years ago waiyin0923 • 0

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pcamethods r

8.0 years ago stolarek.ir • 0

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impute pcaMethods impute pcaMethods

16.5 years ago De-Jian ZHAO ▴ 240

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pcaMethods pcaMethods

updated 15.4 years ago by Wolfgang Huber ★ 13k • written 15.4 years ago by Yury Bukhman ▴ 20

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aroma.light pcaMethods aroma.light pcaMethods

updated 15.6 years ago by Sean Davis 21k • written 15.6 years ago by Tillinghast, Guy, M.D. ▴ 30

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pcaMethods pcaMethods

10.2 years ago • updated 10.1 years ago Julian Gehring ★ 1.3k

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pcamethods

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by allantanaka11 • 0

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PCAtools pcaExplorer pcaMethods

updated 22 months ago by Federico Marini ▴ 150 • written 22 months ago by m610110001 • 0

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metaboliteData pcaMethods pcamethods r package metabolite Data

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by lukasz.galecki ▴ 10

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pcaMethods pcaMethods

13.2 years ago Manca Marco PATH ▴ 340

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pcaMethods pcaMethods

10.2 years ago Guest User ★ 13k

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pcaMethods pcaMethods

13.1 years ago Alfons Gonzalez ▴ 10

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pcamethods missing data

7.1 years ago eli-sava • 0

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Clustering pcaMethods Clustering pcaMethods

14.0 years ago avinash gupta ▴ 130

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pcamethods

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by johnnytam100 • 0

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pcaMethods

10 weeks ago yousavdj • 0

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pcaMethods

3.3 years ago k.vitting.seerup ▴ 120

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pcaMethods

3.0 years ago Gero • 0

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pcaMethods pca

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by yousavdj • 0

19 results • Page 1 of 1

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Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k

Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0

Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…

Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k

IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…

Comment: DESeq2 output used for PCA plot on R studio by Aaliya • 0

I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…

Votes

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Answer: Interpret plot from DiffBind

Answer: How to retrieve gene ontology GO class from gene list?

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