Bioconductor Pcamethods

Showing : pcamethods • reset

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pcaMethods pca

updated 10 weeks ago by James W. MacDonald 65k • written 10 weeks ago by yousavdj • 0

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pcaMethods

10 weeks ago yousavdj • 0

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PCAtools pcaExplorer pcaMethods

updated 22 months ago by Federico Marini ▴ 150 • written 22 months ago by m610110001 • 0

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OutlierD pcaMethods MicroarrayData Microarray

3.0 years ago waiyin0923 • 0

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pcaMethods

3.0 years ago Gero • 0

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pcaMethods

3.3 years ago k.vitting.seerup ▴ 120

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pcamethods

updated 5.5 years ago by James W. MacDonald 65k • written 5.5 years ago by johnnytam100 • 0

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pcamethods missing data

7.1 years ago eli-sava • 0

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pcamethods

updated 7.1 years ago by James W. MacDonald 65k • written 7.1 years ago by allantanaka11 • 0

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metaboliteData pcaMethods pcamethods r package metabolite Data

updated 7.4 years ago by Valerie Obenchain ★ 6.8k • written 7.4 years ago by lukasz.galecki ▴ 10

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pcamethods r

8.0 years ago stolarek.ir • 0

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pcaMethods pcaMethods

10.2 years ago • updated 10.1 years ago Julian Gehring ★ 1.3k

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pcaMethods pcaMethods

10.2 years ago Guest User ★ 13k

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pcaMethods pcaMethods

13.1 years ago Alfons Gonzalez ▴ 10

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pcaMethods pcaMethods

13.2 years ago Manca Marco PATH ▴ 340

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Clustering pcaMethods Clustering pcaMethods

14.0 years ago avinash gupta ▴ 130

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pcaMethods pcaMethods

updated 15.4 years ago by Wolfgang Huber ★ 13k • written 15.4 years ago by Yury Bukhman ▴ 20

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aroma.light pcaMethods aroma.light pcaMethods

updated 15.6 years ago by Sean Davis 21k • written 15.6 years ago by Tillinghast, Guy, M.D. ▴ 30

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impute pcaMethods impute pcaMethods

16.5 years ago De-Jian ZHAO ▴ 240

19 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0