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pcatools
•
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0
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13
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DESeq2 output used for PCA plot on R studio
DESeq2
RSTUDIO
PCAtools
1 hour ago
Aaliya
• 0
3
votes
5
replies
334
views
Differing results from plotMDS and PCAtools
edgeR
PCAtools
updated 23 days ago by
Gordon Smyth
50k • written 25 days ago by
Fabian
• 0
4
votes
8
replies
3.5k
views
Interpreting ellipses in PCAtools for bulk RNAseq
ellipse
RNAseq
PCAtools
updated 12 months ago by
CP
• 0 • written 2.9 years ago by
elizabethe819
• 0
1
vote
3
replies
1.1k
views
Adding ellipse in PCAtools biplot
Biplot
FactoMineR
proteomics
PCAtools
ellipse
updated 15 months ago by
Kevin Blighe
★ 3.9k • written 15 months ago by
M Tuhin
• 0
1
vote
1
reply
934
views
PCA input data from DRAGEN RNA pipeline
illumina
PCAtools
PCA
updated 17 months ago by
Kevin Blighe
★ 3.9k • written 17 months ago by
ilaria.debenedictis
• 0
0
votes
1
reply
844
views
Attempt to install bioconductor 3.15, PCAtools
PCAtools
bioconductor
updated 21 months ago by
James W. MacDonald
65k • written 21 months ago by
pterry
• 0
0
votes
3
replies
1.1k
views
I got error when visualizing my PCA
PCAtools
pcaExplorer
pcaMethods
updated 22 months ago by
Federico Marini
▴ 150 • written 22 months ago by
m610110001
• 0
5
votes
6
replies
2.4k
views
Large difference in PCA plot based on LCPM (log counts per million) and VST (variance stabilizing transformations)
PCAtools
edgeR
pcaExplorer
RNASeq
RNAseq123
2.0 years ago
Alan
• 0
3
votes
2
replies
823
views
PCAtools lables missing or out of the plot
PCAtools
3.1 years ago
luca.s
▴ 50
3
votes
3
replies
2.6k
views
PCAtools - change colour of points
PCAtools
updated 3.2 years ago by
Kevin Blighe
★ 3.9k • written 3.2 years ago by
Terra
• 0
3
votes
15
replies
3.2k
views
How to ellipse a subset of data PCA biplot?
biplot
PCA
RNASeq
PCAtools
updated 3.3 years ago by
Kevin Blighe
★ 3.9k • written 3.3 years ago by
mschmidt
▴ 10
0
votes
1
reply
1.7k
views
Perform a biplot from pcaData and coldata in DESeq2, maybe PCAtools?
PCAtools
biplot
DESeq2
RNASeq
PCA
updated 3.4 years ago by
Kevin Blighe
★ 3.9k • written 3.4 years ago by
ecg1g15
▴ 20
1
vote
3
replies
1.4k
views
PCATools: is it possible to output a single legend when using pairsplot()?
PCATools
updated 3.5 years ago by
Kevin Blighe
★ 3.9k • written 3.5 years ago by
oakhamwolf
• 0
2
votes
4
replies
1.5k
views
Comparing discrete variable to PCA
EDA
pcaExplorer
PCAtools
PCA
updated 2.3 years ago by
Miguel
▴ 10 • written 3.7 years ago by
k.vitting.seerup
▴ 120
14 results • Page
1 of 1
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Replies
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
It is indeed better. Anyway, did you notice this part in the output from `str(ortologos_filtrados)`: `$Gene.ID : int 115709372 115716460 …
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
I'm new here, but its better now?
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
That did NOT really improve things...... Likely I wasn't clear enough, but with R-code I meant both the command you typed, as well as the o…
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Thank you for yout time guido, 1) When the pvalueCutoff = 1 nothing change. 2) output from > `str(ortologos_filtrados) data.frame':…
Answer: Cannabis OrgDb
by
Guido Hooiveld
★ 3.9k
> library(AnnotationHub) > hub <- AnnotationHub() snapshotDate(): 2023-10-23 > query(hub, c("cannabis","orgdb") ) …
Votes
Answer: Cannabis OrgDb
DESeq2: How to find out how well the model fits the data?
Comment: DESeq2 - dispersion estimation when there is none
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
Answer: OrgDb for maize
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