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pd.hta.2.0
•
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0
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2
replies
1.3k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
5.4 years ago
alexander2073
• 0
0
votes
2
replies
1.4k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
5.4 years ago
ladhikari
• 0
2
votes
3
replies
1.2k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 5.4 years ago by
James W. MacDonald
62k • written 5.4 years ago by
relathman
▴ 20
2
votes
13
replies
2.0k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
6.5 years ago • updated 6.0 years ago
s.munster
▴ 40
5
votes
9
replies
4.5k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 6.2 years ago by
James W. MacDonald
62k • written 6.2 years ago by
pbachali
▴ 20
3
votes
5
replies
1.8k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 6.3 years ago by
Martin Morgan
25k • written 6.3 years ago by
Lian Liu
▴ 20
0
votes
5
replies
817
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 6.4 years ago by
James W. MacDonald
62k • written 6.4 years ago by
Vincent J. Carey, Jr.
6.6k
8
votes
2
replies
1.7k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 6.4 years ago by
James W. MacDonald
62k • written 6.4 years ago by
relathman
▴ 20
3
votes
3
replies
1.1k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 6.5 years ago by
James W. MacDonald
62k • written 6.5 years ago by
giroudpaul
▴ 40
3
votes
3
replies
2.1k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 6.9 years ago by
James W. MacDonald
62k • written 6.9 years ago by
jennifer.drake
• 0
7
votes
16
replies
1.8k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 7.1 years ago by
James W. MacDonald
62k • written 7.1 years ago by
Robert Castelo
★ 3.0k
0
votes
1
reply
1.3k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 7.2 years ago by
James W. MacDonald
62k • written 7.2 years ago by
jacorvar
▴ 40
1
vote
0
replies
1.9k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
7.5 years ago
tangboyun
▴ 30
13 results • Page
1 of 1
Recent ...
Replies
Comment: error in ChAMP loading file
by
Benth
• 0
Shouldn't this p-value, which I presume shows the significance of the fold change, be scale-independent? Additionally, shouldn't all of the…
Comment: AnnotationForge::makeOrgPackageFromNCBI - ERROR to access url (NCBI FTP site)
by
jeffbrick852
• 0
[us customer service][1] [1]: https://www.us-customer-service.com/
Answer: DEG analysis with Paired-end RNA-seq data using DESeq2, do I need to contain the
by
swbarnes2
★ 1.2k
The vignette includes that in the design because the example is a mix of single and paired end reads, and that is added to the design so th…
Comment: edgeR: Usage of estimated dispersion from replicates for pools of the same exper
by
Gordon Smyth
47k
`PoolStatus` just indicates whether a sample is a pool or not, i.e., the first option.
Comment: How to map geneIds to ENTREZIDs
by
stacy.genovese
• 0
James - I wish I knew where you lived so I could buy you a beer! Thank you so much for your help. I'm going to work now on converting th…
Votes
A: Limma-voom with external observation weights
Limma-voom with external observation weights
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Comment: Error in .order_seqlevels(chrom_sizes[, "chrom"]) : !anyNA(m32) is not TRUE
Answer: How to map geneIds to ENTREZIDs
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James W. MacDonald
62k
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vs2001
▴ 30
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Mike Smith
★ 5.9k
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shepherl
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Gordon Smyth
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