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pd.hta.2.0
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0
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2
replies
1.5k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
6.6 years ago
alexander2073
• 0
0
votes
2
replies
1.9k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
6.6 years ago
ladhikari
• 0
2
votes
3
replies
1.4k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 6.7 years ago by
James W. MacDonald
65k • written 6.7 years ago by
relathman
▴ 20
2
votes
13
replies
3.1k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
7.7 years ago • updated 7.2 years ago
s.munster
▴ 40
5
votes
9
replies
5.6k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 7.4 years ago by
James W. MacDonald
65k • written 7.4 years ago by
pbachali
▴ 50
3
votes
5
replies
2.2k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 7.6 years ago by
Martin Morgan
25k • written 7.6 years ago by
Lian Liu
▴ 20
0
votes
5
replies
1.1k
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
Vincent J. Carey, Jr.
6.7k
9
votes
2
replies
2.4k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 7.6 years ago by
James W. MacDonald
65k • written 7.6 years ago by
relathman
▴ 20
3
votes
3
replies
1.3k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 7.8 years ago by
James W. MacDonald
65k • written 7.8 years ago by
giroudpaul
▴ 40
3
votes
3
replies
2.6k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 8.1 years ago by
James W. MacDonald
65k • written 8.1 years ago by
jennifer.drake
• 0
7
votes
16
replies
2.4k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 8.3 years ago by
James W. MacDonald
65k • written 8.3 years ago by
Robert Castelo
★ 3.2k
0
votes
1
reply
1.5k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 8.5 years ago by
James W. MacDonald
65k • written 8.5 years ago by
jacorvar
▴ 40
1
vote
0
replies
2.3k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
8.8 years ago
tangboyun
▴ 30
13 results • Page
1 of 1
Recent ...
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Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
russ.bainer
▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions
by
Chris
• 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2
by
Weiqian
▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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