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pd.hta.2.0
•
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0
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2
replies
1.2k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
5.0 years ago
alexander2073
• 0
0
votes
2
replies
1.2k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
5.0 years ago
ladhikari
• 0
2
votes
3
replies
1.1k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 5.0 years ago by
James W. MacDonald
60k • written 5.0 years ago by
relathman
▴ 20
2
votes
13
replies
1.8k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
6.0 years ago • updated 5.5 years ago
s.munster
▴ 40
5
votes
9
replies
4.2k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 5.8 years ago by
James W. MacDonald
60k • written 5.8 years ago by
pbachali
▴ 20
3
votes
5
replies
1.7k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
Lian Liu
▴ 20
0
votes
5
replies
741
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 5.9 years ago by
James W. MacDonald
60k • written 5.9 years ago by
Vincent J. Carey, Jr.
6.6k
8
votes
2
replies
1.6k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 5.9 years ago by
James W. MacDonald
60k • written 5.9 years ago by
relathman
▴ 20
3
votes
3
replies
1.0k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 6.1 years ago by
James W. MacDonald
60k • written 6.1 years ago by
giroudpaul
▴ 40
3
votes
3
replies
1.9k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 6.4 years ago by
James W. MacDonald
60k • written 6.4 years ago by
jennifer.drake
• 0
7
votes
16
replies
1.7k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 6.7 years ago by
James W. MacDonald
60k • written 6.7 years ago by
Robert Castelo
★ 2.9k
0
votes
1
reply
1.2k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 6.8 years ago by
James W. MacDonald
60k • written 6.8 years ago by
jacorvar
▴ 40
1
vote
0
replies
1.8k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
7.1 years ago
tangboyun
▴ 30
13 results • Page
1 of 1
Recent ...
Replies
Comment: conditional command within GRanges
by
Basti
▴ 390
I can't reproduce your issue because you did not provided an example of your dataset (example with `dput(head(data1))`, but in the first ca…
Comment: Error in Create switchAnalyzeRlist
by
k.vitting.seerup
▴ 120
That sounds like you have the wrong version of the annotation compared to which version you used for the quantification?
Comment: Error in Create switchAnalyzeRlist
by
bpshtiwan
▴ 10
Great... now it is same. but still I have problem with four possibilities during using IsoformSwitchAnalyzeR. Knidly, any idea where is the…
Comment: Retrieve gene summary start/end in biomart query
by
rbenel
▴ 20
Hi Mike, I have tried the query without the transcript, and I believe there are cases where I will receive unique transcript start/end si…
Comment: MMDiff2 memory issues
by
e.iich
• 0
running against a similar issue. Have you found any solutions?
Votes
A: EGSEA error during report generation: "only 0's may be mixed with negative subsc
Answer: mapToAlignments_issue
Analysis of peaks generated from Homer using Diffbind
How to select summit size for histone ChiP-Seq in Diffbind
Comment: GSEA with Wikipathways not entirely reproducible
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