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pd.hta.2.0
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0
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2
replies
1.9k
views
pd.hta.2.0 not installed with Bioconductor 3.5 BiocInstaller 1.26.0 R 3.4.1
package installation
pd.hta.2.0
7.7 years ago
alexander2073
• 0
0
votes
2
replies
2.3k
views
Reading CEL files using Oligo and pd.hta.2.0 packages in Windows 7
oligo
pd.hta.2.0
CEL
R
windows 7
7.7 years ago
ladhikari
• 0
2
votes
3
replies
1.8k
views
Filtering of lowly expressed probes in HTA 2.0 using new pd.hta.2.0 version 3.12.2
pd.hta.2.0
hta2.0
affycoretools
updated 7.7 years ago by
James W. MacDonald
68k • written 7.7 years ago by
relathman
▴ 20
2
votes
13
replies
3.9k
views
problems filtering antigenomic probes from HTA 2.0
pd.hta.2.0
R
8.7 years ago • updated 8.2 years ago
s.munster
▴ 40
5
votes
9
replies
6.5k
views
Pre-processing of HTA 2.0 array
pd.hta.2.0
updated 8.5 years ago by
James W. MacDonald
68k • written 8.5 years ago by
pbachali
▴ 50
3
votes
5
replies
2.8k
views
Fail to install "AnnotationHub"
software error
annotation
genefilter
pd.hta.2.0
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
Lian Liu
▴ 20
0
votes
5
replies
1.4k
views
pd.hta.2.0 oddity, possible RSQLite bug?
oligo
rsqlite
pd.hta.2.0
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
Vincent J. Carey, Jr.
6.7k
9
votes
2
replies
3.2k
views
How to deal with Affymetrix GeneChip probeids that map to multiple genes
hta20sttranscriptcluster.db
probe mapping
annotation
pd.hta.2.0
annotationdbi
updated 8.7 years ago by
James W. MacDonald
68k • written 8.7 years ago by
relathman
▴ 20
3
votes
3
replies
1.6k
views
Trouble annotating HTA microarray
hta
pd.hta.2.0
hta20sttranscriptcluster.db
updated 8.8 years ago by
James W. MacDonald
68k • written 8.8 years ago by
giroudpaul
▴ 40
3
votes
3
replies
3.1k
views
Problem using RMA Method in 'Oligo' with HTAFeatureset Objects
affymetrix microarrays
microarray
pd.hta.2.0
oligo
rma
updated 9.2 years ago by
James W. MacDonald
68k • written 9.2 years ago by
jennifer.drake
• 0
7
votes
16
replies
3.0k
views
Can "Glue Grant" arrays be processed with pd.hta.2.0?
pd.hta.2.0
ggh3
oligo
glue grant
updated 9.4 years ago by
James W. MacDonald
68k • written 9.4 years ago by
Robert Castelo
★ 3.4k
0
votes
1
reply
1.7k
views
HTA analysis at transcript level
pd.hta.2.0
transcript
differential gene expression
updated 9.5 years ago by
James W. MacDonald
68k • written 9.5 years ago by
jacorvar
▴ 40
1
vote
0
replies
2.5k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo
pdInfoBuilder
pd.hta.2.0
9.8 years ago
tangboyun
▴ 30
13 results • Page
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Answer: Error in readCodelinkSet function
by
James W. MacDonald
68k
Please don't cross-post to Biostars. Either post here or there, but not both.
Comment: What happened to the Joost2016 dataset
by
shepherl
4.1k
what package is this function from and what did it do when it was working?
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gabriella.jacobson-eisenberg
▴ 20
Here's why: I am not ONLY interested in doing differential expression analysis with my data. While that is one test that I am going to do u…
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by
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The tx in the name stands for transcript. Gene level needs no tximport. You could simply use the standard output from salmon and do what th…
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by
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• 0
Woohoo! Abstract submission for EuroBioC2023 is open! Time to dust off my research and get those submissions ready. Hope to see some awesom…
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Comment: How to load scRNA-seq data from GEO
limma correction for tumor purity
limma correction for tumor purity
Answer: limma correction for tumor purity
Answer: limma correction for tumor purity
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