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updated 5.6 years ago by
James W. MacDonald
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written 5.6 years ago by
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Answer: Correct script for featurecounts in Rsubread
by
Gordon Smyth
47k
See
- https://bioconductor.org/packages/release/workflows/vignettes/RnaSeqGeneEdgeRQL/inst/doc/edgeRQL.html#quantifying-read-counts-for-eac…
Comment: Time-course, comparison of two groups
by
boczniak767
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720
Thank you very much @gordon-smyth ! I'm very happy that my test for interaction is okay. So I'll try to extend my test experiment to three …
Answer: Handling limma usage after running multiple imputation on the covariates with mi
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Gordon Smyth
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limma is not designed to be used with multiply imputed covariates, so I can't offer a solution that uses the multiple imputes.
Averaging t…
Answer: Correct script for featurecounts in Rsubread
by
James W. MacDonald
62k
Here's the relevant section from `?featureCounts`
```
Value:
A list with the following components:
counts: a data matrix c…
Comment: Can I run DESeq2 with SMART-Seq data
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Assa Yeroslaviz
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thanks, the filter is the other way around, true 🙈
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