Showing : pdInfoBuilder • reset
0
votes
5
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1.7k
views
Annotation package built with pdInfoBuilder cannot be installed
annotation pdinfobuilder
9.1 years ago alakatos ▴ 130
0
votes
4
replies
1.5k
views
Passing multiple files to pdInfobuilder
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
updated 11.5 years ago by ▴ 50 • written 11.5 years ago by ★ 13k
6
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4
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2.6k
views
Affymetrix miRNA4.1 / oligo package / pd.mirna.4.1
microarray mirna oligo package pdinfobuilder pd.mirna
updated 4.4 years ago by ▴ 10 • written 6.9 years ago by ▴ 20
0
votes
3
replies
2.7k
views
Draft support for HTA 2.0 with oligo
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 7.8 years ago by ▴ 10 • written 10.2 years ago by ▴ 10
1
vote
5
replies
2.4k
views
Affymetrix Rat Transcriptome Array (Clariom D) annotation
annotation microarray pdinfobuilder oligo
7.6 years ago Ed D • 0
0
votes
3
replies
1.5k
views
Problem with RMA using pdInfoBuilder, oligo and limma
cdf probe affy limma pdInfoBuilder cdf probe affy limma pdInfoBuilder
15.2 years ago Anne-Marie Madore ▴ 30
3
votes
7
replies
1.7k
views
Oligo: cannot fit robust Probe Level linear Models / fitPLM when using a custom CDF
oligo pdinfobuilder pd.mogene.1.1.st customcdf
updated 7.6 years ago by 65k • written 8.1 years ago by ★ 3.9k
0
votes
2
replies
1.2k
views
Error with annotation package with pdInfoBuilder for NimbleGen arrays
pdinfobuilder oligo
updated 8.9 years ago by 65k • written 8.9 years ago by • 0
1
vote
3
replies
2.9k
views
How to analyse clariom d human files
limma pdinfobuilder affy cdf
7.1 years ago yusuf.khan ▴ 10
0
votes
2
replies
1.7k
views
Affymetrix Mouse Promoter array / pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 14.5 years ago by ▴ 50 • written 14.5 years ago by ▴ 330
0
votes
8
replies
2.0k
views
pdInfoBuilder: invalid class object ("ScalarCharacter")
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 14.1 years ago by 6.7k • written 14.1 years ago by ★ 3.9k
0
votes
3
replies
1.2k
views
pdInfoBuider: how to view SQL scheme?
pdInfoBuilder pdInfoBuilder
updated 14.0 years ago by ★ 4.3k • written 14.0 years ago by ★ 3.9k
0
votes
2
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1.0k
views
pdInfoBuilder -- MOUSEDIVm520650
Annotation pdInfoBuilder crlmm Annotation pdInfoBuilder crlmm
updated 13.9 years ago by 65k • written 13.9 years ago by ▴ 100
0
votes
3
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1.4k
views
pd.mapping 10Karray
BiocViews cdf affyio biocViews oligo pdInfoBuilder BufferedMatrix BiocViews BiocViews cdf
updated 16.7 years ago by ★ 7.4k • written 16.7 years ago by ▴ 10
0
votes
4
replies
6.4k
views
Problem "Error: is.character(filenames) is not TRUE" in read.xysfiles (Oligo package)
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 10.0 years ago by 65k • written 10.0 years ago by ▴ 60
0
votes
3
replies
1.2k
views
Error using pdInfoBuilder for NimbleGen Array
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 13.2 years ago by 6.7k • written 13.2 years ago by ▴ 20
0
votes
1
reply
853
views
request for simple usage of probe level normalisations
cdf gcrma oligo pdInfoBuilder cdf gcrma oligo pdInfoBuilder
updated 16.6 years ago by ★ 6.5k • written 16.6 years ago by ▴ 320
0
votes
3
replies
1.3k
views
inquiry for CDF file
BiocViews biocViews pdInfoBuilder BiocViews BiocViews biocViews pdInfoBuilder
15.6 years ago Rob Dunne ▴ 230
0
votes
2
replies
1.0k
views
Continued problems with pdInfoBuilder
pdInfoBuilder pdInfoBuilder
updated 15.4 years ago by 21k • written 15.4 years ago by ▴ 70
0
votes
2
replies
1.6k
views
Custom CDF files
Annotation GO cdf affy PROcess oligo pdInfoBuilder Annotation GO cdf affy PROcess
updated 15.4 years ago by ★ 1.1k • written 15.4 years ago by ▴ 20
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr
updated 14.5 years ago by ▴ 430 • written 14.5 years ago by ▴ 410
0
votes
6
replies
1.6k
views
PdInfoBuilder for nimblegen array
Annotation Organism oligo pdInfoBuilder Annotation Organism oligo pdInfoBuilder
updated 14.2 years ago by ★ 4.3k • written 14.2 years ago by ▴ 40
0
votes
1
reply
966
views
pdInfoBuilder
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 13.0 years ago by ★ 4.3k • written 13.0 years ago by ▴ 40
0
votes
10
replies
3.0k
views
PAIR files -- feature set table
Microarray Annotation Organism annotate pdInfoBuilder Microarray Annotation Organism
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ★ 13k
0
votes
4
replies
1.6k
views
FeatureExpressionSet using list.files() in place of read.xysfiles()
Microarray Annotation GO Organism probe annotate limma convert pdInfoBuilder sva GO sva
updated 10.9 years ago by ★ 4.3k • written 10.9 years ago by ▴ 140
0
votes
1
reply
1.1k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 10.6 years ago by ▴ 50 • written 10.7 years ago by ★ 4.3k
0
votes
1
reply
1.2k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
10.7 years ago Nitesh Turaga ▴ 50
0
votes
1
reply
1.4k
views
Reg: makePdInfoPackage Error in sqliteExecStatement(con, statement, bind.data) : bind.data must have non-zero dimensions
Annotation PROcess pdInfoBuilder charm Annotation PROcess pdInfoBuilder charm
updated 10.7 years ago by ★ 4.3k • written 10.7 years ago by ▴ 50
0
votes
1
reply
1.3k
views
upload multiple genelists at a time for GO or pathway enrichment
GO cdf oligo pdInfoBuilder xps GO cdf oligo pdInfoBuilder xps
updated 10.5 years ago by ▴ 190 • written 10.5 years ago by ▴ 100
0
votes
1
reply
2.0k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
updated 10.4 years ago by ★ 4.3k • written 10.4 years ago by ▴ 290
0
votes
1
reply
1.7k
views
Draft support for HTA 2.0 with oligo
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
updated 10.2 years ago by ▴ 910 • written 10.2 years ago by ★ 4.3k
0
votes
3
replies
1.2k
views
pdInfoBuilder - problem installing the annotation package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 10.1 years ago by ★ 4.3k • written 10.1 years ago by ▴ 60
0
votes
1
reply
745
views
problems with pdInfoBuilder
cdf pdInfoBuilder cdf pdInfoBuilder
updated 16.2 years ago by 65k • written 16.2 years ago by ▴ 10
0
votes
1
reply
1.3k
views
pd.mirna.4.1
pdInfoBuilder pdInfoBuilder
updated 10.0 years ago by 65k • written 10.0 years ago by ★ 13k
1
vote
3
replies
2.4k
views
Probeset/Transcript cluster definitions for HTA2.0 using pdInfoBuilder
BiocViews Annotation Organism biocViews pdInfoBuilder BiocViews BiocViews Annotation
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 40
0
votes
7
replies
1.7k
views
oligo and GenericPDInfo
affy oligoclasses oligo package pdinfobuilder annotationdbi
updated 6.8 years ago by 65k • written 6.8 years ago by ▴ 510
2
votes
3
replies
1.1k
views
Annotation package generation for HTA-2_0 by pdInfoBuilder fails
microarray pdInfoBuilder oligo
updated 3.8 years ago by 65k • written 3.8 years ago by • 0
2
votes
8
replies
1.2k
views
pdInfoBuilder created problematic package for Affymetrix chip tiling array
oligoClasses oligo pdInfoBuilder
2.8 years ago • updated 2.7 years ago efoss ▴ 10
0
votes
2
replies
1.4k
views
pdInfoBuilder fails on the new Arabidopsis Gene ST 1.0 & 1.1 arrays
Annotation oligo pdInfoBuilder oligoClasses Annotation oligo pdInfoBuilder oligoClasses
updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ▴ 630
0
votes
2
replies
1.3k
views
oligo package: extracting position, sequence, and intensity from Affymetrix tiling array
BiocViews Organism biocViews oligo pdInfoBuilder BiocViews BiocViews Organism biocViews
updated 12.1 years ago by ★ 4.3k • written 12.1 years ago by ★ 13k
0
votes
2
replies
1.2k
views
oligo and pdInfoBuilder
Annotation Yeast oligo pdInfoBuilder Annotation Yeast oligo pdInfoBuilder
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 340
0
votes
3
replies
2.0k
views
oligo and pd.aragene.1.1.st annotation
Annotation limma Category pdInfoBuilder Annotation limma Category pdInfoBuilder
updated 11.7 years ago by ★ 7.2k • written 11.7 years ago by ▴ 20
0
votes
7
replies
1.6k
views
install pdInfoBuilder package
Annotation pdInfoBuilder Annotation pdInfoBuilder
updated 11.4 years ago by ★ 4.3k • written 11.4 years ago by ▴ 40
0
votes
0
replies
1.4k
views
Using pdInfoBuilder for Human Exon Array
BiocViews Annotation Organism cdf biocViews oligo pdInfoBuilder BiocViews BiocViews cdf
12.9 years ago Maria Rodrigo-Domingo / Region Nordjyll… ▴ 10
0
votes
0
replies
999
views
problem with pdInfoBuilder
Annotation oligo pdInfoBuilder Annotation oligo pdInfoBuilder
14.9 years ago Elsa Aguera ▴ 10
0
votes
0
replies
3.4k
views
Affymetrix HTA 2 array analysis
BiocViews Annotation Cancer Breast Organism PROcess biocViews pdInfoBuilder BiocViews
10.3 years ago Elena Serrano ▴ 30
0
votes
0
replies
1.3k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.0 years ago zeynep özkeserli ▴ 160
0
votes
0
replies
1.3k
views
Nimblegen promoter medip array platform design file problem
BiocViews Annotation Organism biocViews pdInfoBuilder charm BiocViews BiocViews Annotation
12.0 years ago zeynep özkeserli ▴ 160
1
vote
0
replies
2.3k
views
The current annotation for Affymetrix HTA 2.0 array is problematic
oligo pdInfoBuilder pd.hta.2.0
8.8 years ago tangboyun ▴ 30
0
votes
0
replies
1.1k
views
Need help with pdInfoBuilder package for human ST arrays
Annotation affy oligo pdInfoBuilder Annotation affy oligo pdInfoBuilder
13.8 years ago He, Yiwen NIH/CIT ▴ 360
50 results • Page 1 of 1
Recent ...
Replies
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre
Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k
Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…
Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Votes
Answer: Cross-species analysis - how to compute the mid parent value?
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
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