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peaks
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0
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739
views
Are broad/narrow peak comparable?
Peaks
MAC2
DiffBind
2.8 years ago
Yuan Tian
▴ 270
0
votes
4
replies
948
views
nucleR ERROR unable to find an inherited method for function peakDetection for signature
nucleosome
peaks
error
Job
updated 4.4 years ago by
James W. MacDonald
65k • written 4.4 years ago by
anne.kannengiesser
• 0
2
votes
3
replies
2.3k
views
Counting reads in fixed width peaks with DiffBind::dba.count without re-centering?
diffbind
chipseq
counts
peaks
bedtools
updated 2.9 years ago by
Rory Stark
★ 5.1k • written 6.0 years ago by
Ni-Ar
▴ 10
3
votes
3
replies
4.0k
views
Error "if (is.na(peaks)) { : argument is of length zero " in DiffBind
diffbind
chipseq
peaks
dba
is.na
6.0 years ago
maria.kondili
▴ 10
1
vote
1
reply
1.4k
views
How do I know which peak to analyze?
bioconductor
annotation
peaks
updated 6.4 years ago by
Sean Davis
21k • written 6.4 years ago by
schaud24
▴ 10
5 results • Page
1 of 1
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Comment: Error in champ.load(): The following specified files do not exist
by
Sherin
• 0
it worked! thank you so much!!
Comment: Multi factor design edgeR/Deseq2
by
Elizabeth
• 0
Sorry I realise this thread is ancient, but I'm wondering why it's ok to remove the last column from the design matrix? Also, why this desi…
Comment: DESeq2 setting significant p-value
by
Michael Love
41k
It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.
Comment: Input Question for deseq.r
by
ATpoint
★ 4.0k
It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…
Answer: DESEQ2 output gives multiple groups when only 2 groups are present
by
ATpoint
★ 4.0k
In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …
Votes
Comment: Error in champ.load(): The following specified files do not exist
Answer: Error in read.metharray(basenames = files, extended = extended, verbose = verbos
Using GRanges and IRanges to simply get all chromosome data
A: Using GRanges and IRanges to simply get all chromosome data
Comment: Reading huge bismark coverage files using bbseq::read.bismark
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