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483
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Profiling bioconductor packages in a straightforward fashion
HPC
profiling
performance
2.5 years ago
Jack
• 0
0
votes
5
replies
1.4k
views
How to plot benchmark result of R/ Bioconductor package (getting curve or line graph)?
r
benchmark
performance
ggplot2
7.3 years ago
Jurat Shahidin
▴ 80
2
votes
2
replies
974
views
Any way to speed up splitting relatively big GRanges objects by given threshold ?
r
granges
split
performance
updated 7.5 years ago by
Michael Lawrence
★ 11k • written 7.5 years ago by
Jurat Shahidin
▴ 80
1
vote
8
replies
2.4k
views
most efficient way to read adjacency matrix to make networkd3 graph
r
iterators
performance
updated 7.8 years ago by
phil.chapman
▴ 150 • written 7.8 years ago by
chrisclarkson100
▴ 50
1
vote
2
replies
1.4k
views
DESeq2 performance information for counts tables with very large rows number
deseq2
performance
8.0 years ago
atisou
• 0
5 results • Page
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Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR)
by
marka
• 0
As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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