Bioconductor Pharmacogenomics

Showing : pharmacogenomics • reset

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cancer genomics pharmacogenomics bioinformatics organoid Job

7.8 years ago glt38sheltie • 0

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12.0 years ago Warnich, Louise <lw@sun.ac.za> ▴ 10

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Pharmacogenomics Pharmacogenomics

19.3 years ago Edoardo Saccenti ▴ 130

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Pharmacogenomics Pharmacogenomics

19.3 years ago Edoardo Saccenti ▴ 130

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Pharmacogenomics siggenes Pharmacogenomics siggenes

updated 19.3 years ago by Holger Schwender ▴ 900 • written 19.3 years ago by Edoardo Saccenti ▴ 130

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updated 19.3 years ago by James W. MacDonald 65k • written 19.3 years ago by Edoardo Saccenti ▴ 130

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Pharmacogenomics Pharmacogenomics

19.3 years ago Edoardo Saccenti ▴ 130

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Pharmacogenomics Pharmacogenomics

19.3 years ago Edoardo Saccenti ▴ 130

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Pharmacogenomics Pharmacogenomics

updated 19.3 years ago by Tomas Radivoyevitch ▴ 70 • written 19.3 years ago by Edoardo Saccenti ▴ 130

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Pharmacogenomics Pharmacogenomics

updated 19.3 years ago by Sean Davis 21k • written 19.3 years ago by Edoardo Saccenti ▴ 130

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19.3 years ago Edoardo Saccenti ▴ 130

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Microarray Pharmacogenomics Annotation GO Cancer cdf probe affy makecdfenv limma annaffy

19.7 years ago Mayte Suarez-Farinas ▴ 300

13 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…

Comment: PCA plot suggestions by JKim • 0

cross post: https://www.biostars.org/p/9593486/

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by James W. MacDonald 65k

You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…

Votes

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?

A: How to explain how DESeq2 works to someone with zero bioinformatics background?

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0